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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1012 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | L 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 706A 1072E 1074N (identity: 100.0 %/91.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7od3_A_1 identity=91.6% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :***************************************** ****************************************** **: 7od3_A_1 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAXXXXXXXXXXXXXNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNXXNV: 126 SecStr : EEE SS B SSS S EEEEEEEE SS EEEEEE ------------- EEE SS EEEEEE SS EEEEEEESS STTS EEEEEE -- E: ExpBur :eeeebeebbbbbeeeeeeeeeeeebeebbbbbeeebeebee-------------eeebebeebbbbbbebeeeebebbbbbeebeeeeebbbbbee--ee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :*************** **************** *********************** ************: 7od3_A_1 127:VIKVCEFQFCNDPFLXXXXXXXXXXXXXXXFRVYSSANNCTFEYVSXXXXXXXXXXXXXXXNLREFVFKNIDGYFKIYSKHTPIXXXXDLPQGFSALEPL: 226 SecStr :EEEEE EEEEEEEE --------------- EEEEEE SEEE --------------- EEEEEEEEETTEEEEEEEEE ---- BEEE: ExpBur :bbbbbebebeeebee---------------eebeeeeeeeeeeeee---------------ebebbbbbeeeeebebbbeeeee----ebeeeeebbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :***************** *****************************************************************: 7od3_A_1 227:VDLPIGINITRFQTLLAXXXXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 SecStr :EEEE EEEEEE ------------------ EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS SEEEE B : ExpBur :eebebebebeebbbbbe------------------ebbbbbbebeebebbbebeeebebeebbbbeeebbbbbbbeeeeeebeebeeebeebeeeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 7od3_A_1 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 SecStr : B SB HHHHHS SS STT EEEEE SBB GGGGTTT SEEEESSS GGGGGG BSSEEEEEEEEEGGGGGG STT SHHHHHT : ExpBur :bbbeeeeeebebeebbeeeebbbbeebeeeebeebbeeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbeeeeeeebbbebbebb: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************************************************************************************************: 7od3_A_1 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 SecStr :TT EEEEEEE TTTS TT B EEE SS TT EE SSS SS SSSEE SEEE B TTS GGGSEEEEEEEE BSSS SB : ExpBur :eebebbbbbbebbeebbeeebbeebebbeebeeebeeeeeeeeeeeeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbebbebeeeebebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :******************************************************************************************** : 7od3_A_1 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTXXXXXXXX: 626 SecStr :S SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE S EEEEES TTT S EEEETT --------: ExpBur :eeeeeeebeeebbebbbbbeeeebbbeeeeeebeeeebbeeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbeebebe--------: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : ******************************************** **************************************: 7od3_A_1 627:XXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQ--------XXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 718 SecStr :----- SS S EEEETTEEEES EE SS SEEEETTEEEEE ------------- EEEEE TTEEEEEEEEEEEEEEEE: ExpBur :-----eeebeeeeeeebebeebbbbebeeeeeeeeeebebeeebbbeee-------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: Contact : b queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 7od3_A_1 719:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 818 SecStr :EE EEEE HHHHHTTT HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHHHHHHH S SS BTTB TTTS SSSSS HHHHHHHTTS: ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbbebeeeeeebeeeebeebebebbbeeeeeebebbebbeebbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** ***********************************************************************************************: 7od3_A_1 819:TLXXXGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 918 SecStr : --- TTTT SGGGGT SSHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTSGGGSS HHHHHHHHHHHTT HHHHHTTHHHHHHH: ExpBur :ee---eeeeeeeebeeeebeeeeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :************* **********************************************************************************: 7od3_A_1 919:FNSAIGKIQDSLSXXXXXLGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1018 SecStr :HHHHHHHHHHH ----- HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbbebeeeee-----eeebbebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 7od3_A_1 1019:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1118 SecStr :HHHHHHTSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEE SSSEEEESSS EEEEETTEEEEEE BSSS EE S: ExpBur :ebbeebbbbbbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbbeeeebebbbeebbeeeebbeebbeeeeee: Contact : b b queryA 1127:DVVIGIVNNTVYD:1139 :*************: 7od3_A_1 1119:DVVIGIVNNTVYD:1131 SecStr :SS TT EE B : ExpBur :eeeeeeeeeebee: |