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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | D 1 (B) | polymer(polypeptide(L)) [1034 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | C 1 (L) | polymer(polypeptide(L)) [105 aa] | S2M11 Fab fragment (light chain) | 440N 441L (identity: 100.0 %/91.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7k43_D_1 identity=91.7% |
queryA 15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114 :**************************************************** *************************************: 7k43_D_1 34:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHXXXXXXXXXXXRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 133 SecStr : EEEE TT EE SS SEEEEEEEEE TT EEEEE ----------- EEE SEEEEEEEESS EEEEEEESS BSSS: ExpBur :eeebeeeeeeeeeebebeebbbbbbeeeeeeeeeeebeebbbbbebebebbe-----------ebebeebebeebbbbbbbbeebbbbbbbbbeebeeee: queryA 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214 :***************************** ***************************** ******************************: 7k43_D_1 134:QSLLIVNNATNVVIKVCEFQFCNDPFLGVXXXXXXXXWMESEFRVYSSANNCTFEYVSQPFLMDLEXXXXNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 233 SecStr : EEEEE SS EEEE SEEEEEEEEEE -------- EEEEEEEE EEE ---- EEEEEEEEEETTEEEEEEEEEE SS: ExpBur :ebbbbbeeeebebbebbbbebbebbbbbe--------eeeeeeebeeeeeeeeeeeebeeeebebe----ebeebebbbbbeeeeebebbeeebebeeee: queryA 215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314 :***************************** *********************************************************: 7k43_D_1 234:DLPQGFSALEPLVDLPIGINITRFQTLLAXXXXXXXXXXXXXXWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 333 SecStr : S EEEEEEEE SEEEEEE -------------- SEEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHTTSS SEEEE: ExpBur :ebeeeebbbeeeeebebebebeebbbbbb--------------eeeeebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebebe: queryA 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414 :****************************************************************************************************: 7k43_D_1 334:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 433 SecStr :EEEEE EEEEE B TTHHHHT S BGGG EEEEE SEE HHHHS SS SEEEEESS TTSGGG EESEEEEEEEEEEGGGGGGSSTT : ExpBur :beebeeeeeeebbbbeeeeeebebeebbeeeebbbbbbbeeeebeebbbebeebeeeeeeebbebeebeeeebeeebbbbbebbbbbbbbebbebbbeee: queryA 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514 :****************************************************************************************************: 7k43_D_1 434:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 533 SecStr : SHHHHHT TT EEEEEEE HHHH SS B EEE SS TT EE SSS TT BTTEE SEEE B TTS GGGSEEEEEEEE: ExpBur :eeebbbbbbbbbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeebeeeeeeebeeeeeeebeebbebbebeeeeeebebbbbbbbbb: Contact : bb queryA 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614 :****************************************************************************************************: 7k43_D_1 534:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 633 SecStr :EE SS EE S SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT S EEEEET: ExpBur :beeeeeebbbbbeeeeeeebeeebbebbbbeeeeebbbeebeeebeeeeeebeeeeeeebbbbbeeeeebbbbeebeebbbbbbbbbeeebeebbbbeee: queryA 615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714 :******* *********************************** *************************: 7k43_D_1 634:VNCTEVPXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQXXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAI: 733 SecStr : TTT ------------------- EEEETTEEEES EE S SEEEETTEEEEE -------------- EEEEE TTEEE : ExpBur :bebeebe-------------------eebebeebbbeebeebeeeeeeebebeeebbbbee--------------eebbbbeeeeeeeeeeeeeeeeeeb: queryA 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814 :****************************************************************************************************: 7k43_D_1 734:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 833 SecStr : S EEEEEEEEEEE EEEE HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS TT TTTSB TTSSS : ExpBur :eeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbeebeeebeeeeeeebeebebebbbeeeeeebe: queryA 815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914 :************ ******************************************************************: 7k43_D_1 834:RSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXXLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 933 SecStr : BHHHHHHHHH ---------------------- HHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS HHHHHHHHHHHTT HH: ExpBur :bbebbbbbbeee----------------------eeeebeeebbeeeeeebeeeebbeebebbbbbbbebbeebeeeeeeebebbebbbebbeebebeee: queryA 915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014 :*********************************************************************** ***************************: 7k43_D_1 934:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIR:1033 SecStr :HHHHTHHHHHHHHHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbeeeeeebbebbeebbeebeeebeeeeeebeebeebeeebeebbeebbeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeeb: queryA 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114 :****************************************************************************************************: 7k43_D_1 1034:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1133 SecStr :HHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE S EEEEES EESSSEEEEESSSEEEESSS EEEE TTS EE: ExpBur :beebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbbeee: queryA 1115:ITTDNTFVSGNCDVVIGIVNNTVYDP:1140 :**************************: 7k43_D_1 1134:ITTDNTFVSGNCDVVIGIVNNTVYDP:1159 SecStr : BTTSEEEEEETTT TT EE B : ExpBur :bbeebbeeeeebeebeeeeeeebeee: |