Protein Model on 7fg7_A_1 (TEMPLATE: 7fg7 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1114 aa] Spike glycoprotein :SPIKE_SARS2
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7fg7_A_1 identity=100.0%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :****************************************************************************************************:
7fg7_A_1      27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
SecStr          : EEE  STT          S  B  EEEE  TT EEE B    TTSSTTTTS SS  EE TT EEEEEEESSS    EEEESSSSSSS EEEEEE SS E:    
ExpBur          :eebebeebbbbbeeeeeeebebeeeeebbbebebebbebeebeeeeeeeeeebbbeebebeebbbbbbebeeeebebbbbbeebeeeeebbbbbbeeeeb:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :****************************************************************************************************:
7fg7_A_1     127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
SecStr          :EEE       S TT S  SSSSSS  TTSS TT    TT   EEEE    SHHHHHTTTSEEEEEEEE  BTTB  EEE  EEES SSS   S    EE :    
ExpBur          :bbebbbbeebebbbeeebeeeeeebeeebeeebeeeeeeeeeeeeeebbebeeebeeeeeebbbbbbbbbeeeebbbbbebbebeeeeebeeeebbbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :****************************************************************************************************:
7fg7_A_1     227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
SecStr          :   B      EEEE        SS S GGG   TT   BEEE  EEEE  B   TTS    B  SSS HHHHHHHHTT SS  SEEEEE          S:    
ExpBur          :eebebebebeebbbbbebeebeeeeeeeebbebeeebebbbbbbeebebbbebeeeeebeebbbbbeebbbbbbbeeebbebeeeeeebeeeebeeeeee:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
7fg7_A_1     327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
SecStr          : B  S   B  HHHHHS     BSTT EEEEE SSB  SHHHHHSTT SEEEESSS SSGGGG  BSEEEEEEEEEEGGGGGG STT  SHHHHHT    :    
ExpBur          :bbbbeeeeebebeebbeeeebbbbbebeeeebeebbbbbeebeeeeebeeeebeeeeeeebbbebbbbbbbbbbbbbbebeeebbeeeeeebbbbbbbee:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
7fg7_A_1     427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
SecStr          :SS   EEEEEE TTTS  TT EEEEEEE   S    SS       SS  SSSTTTTSS   S  SEEEEEE TTS SSSSEEEEEEEEEE SSSS  B  :    
ExpBur          :eeebbbbbbbebeeebeeeebbeebebbeebeeebeeeeeeeeebeebeeeeeebeeeeeeeeebeeebebeeeeeeeebbebbbbbbbeeeeeebbbbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :****************************************************************************************************:
7fg7_A_1     527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
SecStr          :S        SS EEEEETTEEEEEEEEE  S   TT  EEESSTT EEEEE TTT  EEEEE SS   EEEEE  SSS S  EEEETT  TTS SS SSS:    
ExpBur          :eeebeebeeeebbbbbbbeeeeebbbeebeeebeeeebeeeeeeeeeebbbbbeeeeebbbeebeebbbbbbbbbbeeeeebbbbbeebebeeebbbeeb:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :****************************************************************************************************:
7fg7_A_1     627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
SecStr          : BSSSTTB  SSSSS EEETTEEEESEEE S  B  SSEEETTEE   SS S  SS  SSBSSS EEEEEB  S        SSEEEEEEEE  EE  EE:    
ExpBur          :eeeeeebebeeeebeebebeebbbbbbeeeeeeeeeebebeeebbbbbeebeeeeeeeebbbeeebbbbeebeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
7fg7_A_1     727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
SecStr          :EE    EEEE HHHHHT S HHHHHHHHHH THHHHHHHHHHHHHHHHHHHHHHHH   SS     S   STT   TTTS  TTSTT   HHHHHHHHHS:    
ExpBur          :bbbbbbbbebebeebbbeebeebeebbeeeeeebeebeebbeebbebbbebbeebbeeeeeeeeeeeeeebeebebeebbbeeeeeeebbebbbbbbeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :****************************************************************************************************:
7fg7_A_1     827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
SecStr          : TTTTTTTSSS  STTSS  SSSS     SSEEEE  SS HHHHHHHHHHHHHHHHHTTTSTTTSS     HHHHHHHHHHHHT  HHHHHHTHHHHHHH:    
ExpBur          :eebbebbeeeeeeeeeeeeeeeeebbbeeebbebeeeebeeeebbeebebbbbbbbbbbeebbeeeeeeeebeebbbebbeebebeeeebeeeeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :****************************************************************************************************:
7fg7_A_1     927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
SecStr          :HHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHGGG  TTSS SSHHHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebbeebeeeeeebeebbebbeebbebbeebeeeeeeeeebebbebeebbeebeeeebeebbeebbebbbeebeebbeebeebbeebeeebeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
7fg7_A_1    1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
SecStr          :HHHHHHHHS   STBTTBSSEEEEEEEEEETTEEEEEEEEE EEEEEEEEEES EEETTEEEE TTSEEEESSS EEEE TTS   EE BTTT EE S S:    
ExpBur          :ebbeebbebbbeeeebbbeeebbbbbbbbbebbbbbbbbbbeebeeeebebbebbbeeeebbebeeeebbbeeeebebbeebebeeeebbeebbeeeeeb:    

queryA      1127:DVVIGIVNNTVYDP:1140
                :**************:
7fg7_A_1    1127:DVVIGIVNNTVYDP:1140
SecStr          :SSSTT B    B  :    
ExpBur          :eeeeeeeeeebeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123