Protein Model on 7fg2_A_1_B_1 (TEMPLATE: 7fg2 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1086 aa] Spike glycoprotein :SPIKE_SARS2
2 b B 1 (D) polymer(polypeptide(L)) [116 aa] K-874A VHH 346R 446G 447G 449Y 450N 451Y 466R 472I 473Y 487N 488C 489Y (identity: 100.0 %/97.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7fg2_A_1 identity=97.7%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :****************************************************************************************************:
7fg2_A_1      27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
SecStr          : EEEE S     SSS   SS   EEEEEE  TTEEEE B    SS  SSSSS SS  EE TT  EEEEEBSSS    EEEESSSSSSS EEEEEE SS E:    
ExpBur          :eebebebbbbbebeeeebeeeeeeeeeebbbbeeebeebebbeeeeeeebeebbbbebebeebbbbbbbbeeeebbbbbbbebbeeeeebbbbbbeeeeb:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :****************        ****************************************************************************:
7fg2_A_1     127:VIKVCEFQFCNDPFLGXXXXXXXXSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
SecStr          :EEE       S SS  --------  SSS  TT    TT   EEEES     SHHHHS SEEE EEEEEEETTEEEEEE  EEES TTS   S    EEE:    
ExpBur          :bbbbbbbeebebbbee--------eeeeeeeebeebeeeeeeeeeeebbebbeebeeeeebbbbbbbbbbeeeebbbbbeeeebeeeeebeeeeebbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :****************************************************************************************************:
7fg2_A_1     227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
SecStr          :E  B      EEEE        SSTTSSTT   SSS EEEE   EEEEEEEEE SSS EEEEE SSS HHHHHHHHTTSS  BSS           BS  :    
ExpBur          :eebeeebebeebbbbbebeeeeeeeeeeebbebeeebbbbbbebeebebbbebeeebebeebbbbebebbbebbbeeebeebeebebebeeeeeeeeeee:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
7fg2_A_1     327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
SecStr          :   S       HHHHHS      STT   EEE SS    HHHHHSTT SB  EESS SGGGTTSEESEEEEEEEEE TGGGGGSSTT  SHHHHHT    :    
ExpBur          :bbeeeeeeebeeeeebeeeebebbbebeeeebbebebebeebeeeeeeeebebeebeeeebbeeebbebebbbbbbbbebbeebbbeeeeebbebbbebe:    
Contact         :                   b                                                                                

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
7fg2_A_1     427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
SecStr          :SS EEE  BEE TTTT  TT EEEEEEE S S    SS         SSS  SSSTTTT SS  SEEEEEE SSS TTS  EEEEEEEEE SSSS  EE :    
ExpBur          :eeebbbbbbbebeeebbeeeebeebeebeeebeebeeeeebeeebeeeeeeeeebbeeeeeeeebbeebebeeeeeebebbebbbbbbbeeeeeeeebeb:    
Contact         :                   bb bbb              b     bb             bbb                                     

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :****************************************************************************************************:
7fg2_A_1     527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
SecStr          :         SS EEEEETTEEEEEEEEE      SS S   SSTT   EEE TTT  EEEEE S       B  BTTT    B B TT  GGG TTTTT :    
ExpBur          :eeeeeeebeeebbebebeeeeeebbbeebeeebeeebeebeeeeeeeebbbbebeeebbebeebeebbbbbbbbbeeebebbbbbbeebebeeebbeeeb:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :****************************************************************************************************:
7fg2_A_1     627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
SecStr          : SS S TTTTT  S  EEETTEEESSB   SS     S  BTTBB    S SS TT  SSSSTTSB  B             SS  EEEEEEEEEE  EE:    
ExpBur          :eeebebebbebeeeeeeebebbbbbbbeeeeeeeeeebebeeebbbebeeeeeeeebebbbbbebbbbbeebeeeeeeeeeeeeebebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
7fg2_A_1     727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
SecStr          :EE      EE HHHHHTSS HHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH  SSS     SS   TT   SSSS  SSSGGG  HHHHHHHHHS:    
ExpBur          :bbbbbebbebebeebbbeebeebeeebeeeeeebeebeeebeebbebbbebbeebbbebeeeeeeeeeeebeebebebbbbbeeeeeebbebbbbbeeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :********                  **************************************************************************:
7fg2_A_1     827:TLADAGFIXXXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
SecStr          : SSTT   ------------------   SSEE    SS HHHHHHHHHHHHHHHHTT TTSSSSS     HHHHHHHHHTTTT  HHHHHHHHHHHHHH:    
ExpBur          :eeeeeebe------------------eeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :****************************************************************************************************:
7fg2_A_1     927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
SecStr          :HHHHHHHHHHHHHH TTTTHHHHHHHHHHHHHHHHHHHHHS  TTSS SSHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbebbeebbeebeeeeeebeebbebbeebbebbeebbeebeeeeebeebebeebeeeeeeeebeeebeebbebbbebbeebbeebeebbeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
7fg2_A_1    1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
SecStr          :HHHHHHHSS   STTTSSSSEEEE   B  SSEEEE  EEEEEEEEEE EE S B  SS   EESSSEEEESSSSEEEEBTTB       STTEE  SSS:    
ExpBur          :ebbeebbbbbbeeeeebbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbeeeeebbbeeebbbbbeeeebebbbeeeeeeeebeeebbeeeeee:    

queryA      1127:DVVIGIVNNTVY:1138
                :************:
7fg2_A_1    1127:DVVIGIVNNTVY:1138
SecStr          : S SS B S   :    
ExpBur          :eeeeeeeeeebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123