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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1073 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | E 1 (H) | polymer(polypeptide(L)) [120 aa] | Fab P17 heavy chain | 455L 470T 471E 481N 482G 483V 484E 489Y 490F 492L 493Q (identity: 100.0 %/94.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cwl_A_1 identity=94.6% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :****************************************************************************************************: 7cwl_A_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEEESS EE S S EEEEEEEE SSEEEE EEEEEE SSS EEE EE S EEEEE SS EEEE SSSSSS: ExpBur :eeeebeeebeeeeeebebebbbbbbbeeeeeeeeeeeeeebbbbbeeebbbbbbbeeeeeeeeeebebeebebeebbbbbbebeeebbbbbbbbbbeeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7cwl_A_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEE TTSSEEEEEEEEEE SS EEEEE SSTT EEEESTTTEEEEEEEEEEEEES SS SSSS TTEEEEEEEE SSEEEEEEEEE SS: ExpBur :bebbbbbbeeeebebebbebebbebbbbbbeeeeeeeeeebbeeebbeeeeeeeeeeeeeebbeeeeeeebeeebbbbbbbbbeeeebbbbbeebebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :************************************** **********************************************************: 7cwl_A_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPXXXXSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S EEEEEEEEE EE EEEEE S ---- S EEEEEEE EEEEEEEEE TTS EEEEEETTS TTHHHHHHHTSSS SEEE: ExpBur :eebeeeebbbeeebebebebebeebbbbbbbeeeeeee----eeeebeebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbebeebebeeeeb: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :***************** ********************************************************************************: 7cwl_A_1 314:QTSNFRVQPTESIVRFPXXXNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :E SEEEE --- HHHHTT S STT EEEEE SB HHHHHHH SEEEESSS TTGGGTS BS EEEEEEEE TTGGGT STT: ExpBur :ebeeeeeeeeeebebbe---eebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeeeebeebeeebbbebebbbbbbebebbeebbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7cwl_A_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT SS EEEE B TTTSS TT B EEE SS TT EESSSS TTS SSEE SEEE B TTS GGG EEEEEE: ExpBur :eebebbbbbbbbbeebebbbbbbebbeebbeeebbeebebbeeeeeebeebeebeeeebbeeeeeebeeeeeeebeebbeebebbeebeeeebbbbbbbb: Contact : b bb bbbb bb bb queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :************** ************************************************************************************: 7cwl_A_1 514:SFELLHAPATVCGPXXSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :E SS B -- SSEEEEEETTEEEEEE EE TT B TTS B EE SSS EEE S EEEEE TTT S EEEEE: ExpBur :bbbeeeeebebbbe--eeebbeeebbebbbbebeeebebeeeeeebeeeebebeeeeeeeebbbbbeeeebbebeeeeeebbbbbbbbbeebeebbbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7cwl_A_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :S TT -------------------- EEE SSEEEES EE SS B EEEETTEEEE ------------ EEEE B S SSEEE: ExpBur :ebeeeee--------------------eeeebeebbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7cwl_A_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EEEEEEEEEEEEEEE EE HHHHHS S HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS SSS TTTS SSSSS: ExpBur :bbbebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeebebeeeeebeebebeebbeeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ******************************************************************: 7cwl_A_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHHH -------------------- HHHHHHHHTEE SS HHHHHHHHHHHHHHHHHHTTTTSSSS HHHHHHHHHHHHT T: ExpBur :eebebbbbbbeebe--------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7cwl_A_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHHHHHHHHHHHHHHHHHHHHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebbeebeebeeebeebbebeeebeebbeebeeebeeeeebeebebeebbeebeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7cwl_A_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTTS SSSSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEESSSSEEEE SSS B: ExpBur :bbeebeebbeebbebbeebbbeebeeeebbeeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbebeebebbbeeeebebbbebbbbee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7cwl_A_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr : BTTTEEE S TTT SS B B SHHHHHH : ExpBur :ebbeeebeeeeeeeeeeeeeeeebeeeeeeeeee: |