Protein Model on 6zp0_A_1_B_1
(TEMPLATE: 
6zp0
)Protein Model on 6zp0_A_1_B_1
(TEMPLATE: 6zp0
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1030 aa] | Spike glycoprotein :SPIKE_SARS2 | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1030 aa] | Spike glycoprotein :SPIKE_SARS2 | 41K 42V 43F 47V 113K 115Q 132E 167T 198D 200Y 224E 230P 231I 232G 369Y 413G 737D 740M 745D 755Q 756Y 757G 758S 759F 762Q 765R 779Q 786K 787Q 788I 789Y 790K 792P 796D 797F 854K 855F 856N 860V 861L 862P 863P 864L 866T 869M 872Q 873Y 883T 886W 889G 890A 892A 894L 895Q 896I 897P 898F 900M 904Y 907N 913Q 914N 917Y 918E 963V 964K 966L 967S 976V 978N 981L 982S 983R 984L 985D 1005Q 1009T 1012L 1019R 1027T 1030S 1031E 1034L 1035G 1039R 1144E (identity: 100.0 %/92.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6zp0_A_1 identity=92.2% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
:******************************************* ***********************************************:
6zp0_A_1 18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117
SecStr : EEE S B SSS SEEEEEEEEE TT EEEEEE ---------- EE S EEEEEEESS EEEEEEESS SSSS EEEEEE SS E:
ExpBur :eebebebbbbbbbeeeeeeeeeeebeebbbbbeeebbbbebee----------ebeebebeebbbbbbbbbbbbbbbbbbbeebebeebbbbbbeebeee:
Contact : bbb b b b
queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
:***************** **************************************************************************:
6zp0_A_1 118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 217
SecStr :EEEEE EEEEEEE --------- EEEEE S EEEE S SS EEEEEEEEEETTEEEEEEEEEE SSS SS BEEE:
ExpBur :ebebbebebbeebbbbe---------eeeeeebeeeeeeeeeeeebeeeeeebeeeeeebebbbbbbbbeeeeebbbbbeeeebeeeebbbeeeebbeee:
Contact : b b b b b
queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
:******************* *******************************************************************:
6zp0_A_1 218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317
SecStr :EEEE EEEEEE -------------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS SEEEEEEEEE SSEE:
ExpBur :eebebebebeebbbbbbee--------------ebebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeebeeeeeeeb:
Contact : bbb
queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
:****************************************************************************************************:
6zp0_A_1 318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 417
SecStr :EE B HHHHS S BGGG EEEEE SEE HHHHHHSTT SEEEEESS TTTTTT EES EEEEEEEEEGGGGGGSSTT SHHHHHT :
ExpBur :ebbbeeeeebebeebbeeeebebbeebeeeebbebbbebeebeeeeeeeeeebeebeeeebbeebbbebebbbbbbebebeebbbbeeeeebbbebbebb:
Contact : b b
queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
:****************************************************************************************************:
6zp0_A_1 418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517
SecStr :TT EEEEEEE TTTT TT B EEE SS TT EESSSS SS BTTEE SEEE B TTS GGGSEEEEEEEEE SSS EE :
ExpBur :eebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeebeeeebeeeeeeebeeeeeeebeebbebbebeeeeeebebbbbbbbbbbeeeeeebbbbb:
queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
:********************************************************************************************** :
6zp0_A_1 518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617
SecStr :S SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT EEEEET TTT ------:
ExpBur :eeeeeeeeeeebbebbbbeeeeebebeebeeebeeeebebeeeeeebebbbbeeeeebbbbeebeebbbbbbbbbeeebeebbbbeeebeeeee------:
queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
: ************************************ **************************************:
6zp0_A_1 618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr :-------------- EEEETTEEEES EE SS B SEEEETTEEEEEE ------------ EEEEEEB S TTEEEEEEEEEEEEEEEE:
ExpBur :--------------eebebebbbbeebeebeeeeeeebebeeebbbbbee------------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:
queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
:****************************************************************************************************:
6zp0_A_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr :EE EEEE HHHHHTSS HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS TTSSS HHHHHHHTT :
ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbebbeeebeeeeeeebeebebeebbeeeeeeeebbebbbbbbebb:
Contact : b b b bbbbb b b b bbbbb b bb
queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
:* *************************************************************************:
6zp0_A_1 814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr : -------------------------- TTSEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHTTT THHHHHTHHHHHHH:
ExpBur :e--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbeb:
Contact : bbb bbbbb b b bb b b bb b bbbbb b b b bb bb
queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
:****************************************************************************************************:
6zp0_A_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :beebbeebeeebeeeeeebeebbebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebbebbeebbebbbebbeebbeebeebbeebeebbeebb:
Contact : bb bb b b bbbbb b b b b
queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
:****************************************************************************************************:
6zp0_A_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr :HHHHHHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS EE BTTTEEEEEET:
ExpBur :ebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbbeeeebbbbbeebbbeeebbeeebeeeeeb:
Contact :b bb bb b
queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147
:*********************:
6zp0_A_1 1114:DVVIGIVNNTVYDPLQPELDS:1134
SecStr :TTSTT EE B TTHHHHH :
ExpBur :eeeeeeeeeebeeeeeeeeee:
Contact : b
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