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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | B 1 (B) | polymer(polypeptide(L)) [1050 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | L 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 717N 926Q (identity: 100.0 %/93.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zb4_B_1 identity=93.3% |
queryA 15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114 :**** ********************************************** ***************************************: 6zb4_B_1 15:CVNLXXXXXXPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114 SecStr : ------ EEE S SS S EEEEEEEE SS EEE ----- EE SS EEEEE BSS EEEEEEESS STTS: ExpBur :eeee------eeeebebbebbbbbeeeeeeeeeeeebeebbbbbeeebeebebeee-----eeebbbeebebeebbbbbbbbeeebbebbbbbeebeeee: queryA 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214 :***************************** ******************* ************************* *: 6zb4_B_1 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVXXXXXXXXXXXXXFRVYSSANNCTFEYVSQPFXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPIXXXR: 214 SecStr : EEEEE SS EEEEE EEEEEEEE ------------- EEES EE S ---------- B EEEEEEETTEEEEEEE B --- : ExpBur :ebbbbbeeeebebbbbbebebbeebbbee-------------eebeeeeeeeebeeeeeee----------eeebebbbbbeeeeebebbbeeeee---e: queryA 215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314 :******************************* ************************************************************: 6zb4_B_1 215:DLPQGFSALEPLVDLPIGINITRFQTLLALHXXXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314 SecStr : EEEEEEE EEEEEEEE --------- EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEE: ExpBur :ebeeeebbbeeeeebebebebeebbbbbbbe---------eeebeeebbbbbbbebeeeebbbebeeeeebeebbbbeeebbbebbbeeeeeebeebeee: queryA 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414 :****************************************************************************************************: 6zb4_B_1 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414 SecStr : B B SB HHHHT S BGGG EEEEE S B GGGSTTT SEEEESSS GGGTTS EESSEEEEEEEEEGGGGGGSSSS : ExpBur :beebeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebebeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbebebbebbbeee: queryA 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514 :****************************************************************************************************: 6zb4_B_1 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514 SecStr : SHHHHHT TT EEEEEEE TTTS SS TT EEE SS TT EESSSS SS SSSEE SEEE SSS TTSSEEEEEEEE: ExpBur :eeebbbebbebeeebebbbbbbebbeebeeeebbeebebbeebeeebeeeeeeeeeeeeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbeb: queryA 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614 :****************************************************************************************************: 6zb4_B_1 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614 SecStr : SSS EE S SS EEEEETTEEEEEEEEE TT B TTS EEE TTT EEEEE S EEEEE TTT EEEETT: ExpBur :bebeeeebebbbeeeeeeebeeebbebbbbbbeeebbbeeeeeebeeeebbeeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbeeebeeebbbbee: queryA 615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714 :**** ********************************************* **************************: 6zb4_B_1 615:VNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAI: 714 SecStr : ------------- S S S B SSSEEES EE S SEEEETTEEEEEE ------------ EEEEEE S TT EE : ExpBur :bebe-------------eeebeeeeeeeebbeebbbbebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeeb: queryA 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814 :************************************************************************************************* **: 6zb4_B_1 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXSK: 814 SecStr : S EEEEEEEEEEE EEE HHHHHTTT HHHHHHGGGT SSHHHHHHHHHHHHHHHHHHHHHHH S SS SS SS TTTS TT - : ExpBur :beebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeeeeeeeeeeeeebebebbbeeeee-ee: Contact : b queryA 815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914 :************** ***********************************************************************************: 6zb4_B_1 815:RSFIEDLLFNKVTLXXXGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914 SecStr : HHHHHHHTTS --- TTTSTTTTTTSSSSHHHHTTTEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS HHHHHHHHHHTTT SH: ExpBur :bbebbebbbeebee---eeeeeeeebeeeebeeeeebbbeeebbeeeeeebeeeebbebbebbbbbbbebbeebeeeeeeeeebbebbbebbeeeebeee: queryA 915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014 :****************************************************************************************************: 6zb4_B_1 915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014 SecStr :HHHTSHHHHHHHHHHHHHHHHHHHSSS HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbeeeeeebbeebeebbeebbeebeeeeeebeebbebbeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeee: Contact : b queryA 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114 :****************************************************************************************************: 6zb4_B_1 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114 SecStr :HHHHHHHHHHHHHHHHHTTSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEB S EESSSEEEE SSSEEEESSSSEEEEETTEEEEE : ExpBur :beebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebeeeee: queryA 1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139 :*************************: 6zb4_B_1 1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139 SecStr : BSTT EEEEETTS TT EE B : ExpBur :beeebbeeeeebeeeeeeeeeebee: |