Protein Model on 6zb4_B_1_F_1 (TEMPLATE: 6zb4 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS2) B 1 (B) polymer(polypeptide(L)) [1050 aa] Spike glycoprotein :SPIKE_SARS2
2 b F 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 468I (identity: 100.0 %/93.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zb4_B_1 identity=93.3%
queryA        15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114
                :****      **********************************************     ***************************************:
6zb4_B_1      15:CVNLXXXXXXPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114
SecStr          :    ------  EEE   S      SS    S EEEEEEEE  SS  EEE      -----        EE SS EEEEE BSS  EEEEEEESS STTS:    
ExpBur          :eeee------eeeebebbebbbbbeeeeeeeeeeeebeebbbbbeeebeebebeee-----eeebbbeebebeebbbbbbbbeeebbebbbbbeebeeee:    

queryA       115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214
                :*****************************             *******************          *************************   *:
6zb4_B_1     115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVXXXXXXXXXXXXXFRVYSSANNCTFEYVSQPFXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPIXXXR: 214
SecStr          : EEEEE  SS  EEEEE   EEEEEEEE ------------- EEES      EE   S  ----------  B  EEEEEEETTEEEEEEE  B --- :    
ExpBur          :ebbbbbeeeebebbbbbebebbeebbbee-------------eebeeeeeeeebeeeeeee----------eeebebbbbbeeeeebebbbeeeee---e:    

queryA       215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314
                :*******************************         ************************************************************:
6zb4_B_1     215:DLPQGFSALEPLVDLPIGINITRFQTLLALHXXXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314
SecStr          :         EEEEEEE      EEEEEEEE ---------          EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S   SEEEE:    
ExpBur          :ebeeeebbbeeeeebebebebeebbbbbbbe---------eeebeeebbbbbbbebeeeebbbebeeeeebeebbbbeeebbbebbbeeeeeebeebeee:    

queryA       315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414
                :****************************************************************************************************:
6zb4_B_1     315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414
SecStr          :          B  B     SB   HHHHT S   BGGG EEEEE S B  GGGSTTT   SEEEESSS GGGTTS EESSEEEEEEEEEGGGGGGSSSS :    
ExpBur          :beebeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebebeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbebebbebbbeee:    

queryA       415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514
                :****************************************************************************************************:
6zb4_B_1     415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514
SecStr          : SHHHHHT    TT  EEEEEEE TTTS  SS  TT EEE   SS   TT        EESSSS  SS  SSSEE SEEE    SSS TTSSEEEEEEEE:    
ExpBur          :eeebbbebbebeeebebbbbbbebbeebeeeebbeebebbeebeeebeeeeeeeeeeeeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbeb:    
Contact         :                                                     b                                              

queryA       515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614
                :****************************************************************************************************:
6zb4_B_1     515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614
SecStr          :   SSS   EE S        SS EEEEETTEEEEEEEEE      TT  B   TTS   EEE TTT  EEEEE S    EEEEE  TTT    EEEETT:    
ExpBur          :bebeeeebebbbeeeeeeebeeebbebbbbbbeeebbbeeeeeebeeeebbeeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbeeebeeebbbbee:    

queryA       615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714
                :****             *********************************************            **************************:
6zb4_B_1     615:VNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAI: 714
SecStr          :    -------------  S S   S B   SSSEEES EE S     SEEEETTEEEEEE ------------  EEEEEE   S        TT EE :    
ExpBur          :bebe-------------eeebeeeeeeeebbeebbbbebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeeb:    

queryA       715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814
                :************************************************************************************************* **:
6zb4_B_1     715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXSK: 814
SecStr          : S EEEEEEEEEEE     EEE HHHHHTTT HHHHHHGGGT SSHHHHHHHHHHHHHHHHHHHHHHH S SS     SS   SS   TTTS  TT -  :    
ExpBur          :beebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeeeeeeeeeeeeebebebbbeeeee-ee:    

queryA       815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914
                :**************   ***********************************************************************************:
6zb4_B_1     815:RSFIEDLLFNKVTLXXXGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914
SecStr          :  HHHHHHHTTS  ---     TTTSTTTTTTSSSSHHHHTTTEEE   SS HHHHHHHHHHHHHHHHHHTTGGGSSS     HHHHHHHHHHTTT  SH:    
ExpBur          :bbebbebbbeebee---eeeeeeeebeeeebeeeeebbbeeebbeeeeeebeeeebbebbebbbbbbbebbeebeeeeeeeeebbebbbebbeeeebeee:    

queryA       915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014
                :****************************************************************************************************:
6zb4_B_1     915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014
SecStr          :HHHTSHHHHHHHHHHHHHHHHHHHSSS    HHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHH  HHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbeeeeeebbeebeebbeebbeebeeeeeebeebbebbeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeee:    

queryA      1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114
                :****************************************************************************************************:
6zb4_B_1    1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114
SecStr          :HHHHHHHHHHHHHHHHHTTSS   STTSSSSSEEEEEEEEEETTEEEEEEEEEEE    EEB  S EESSSEEEE SSSEEEESSSSEEEEETTEEEEE :    
ExpBur          :beebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebeeeee:    

queryA      1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139
                :*************************:
6zb4_B_1    1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139
SecStr          : BSTT EEEEETTS TT EE   B :    
ExpBur          :beeebbeeeeebeeeeeeeeeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123