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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (C) | polymer(polypeptide(L)) [1035 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | W 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 457R 460N 462K (identity: 100.0 %/92.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zb4_A_1 identity=92.0% |
queryA 15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114 :**** ******************************************** **************************************: 6zb4_A_1 15:CVNLXXXXXLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAXXXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114 SecStr : ----- EEEE S EE SS S EEEEEEEE SSEEEEEE --------- EEE SS EEEEE BSS EEEEEEESS STTS: ExpBur :eeee-----eeeeeeebeebbbbbeeeeeeeeeeeebeebbbbbebebeebeb---------eebebeebebeebbbbbbebeeebbebbbbbeebbeee: queryA 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214 :***************************** ***************** ************************ : 6zb4_A_1 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVXXXXXXXXXXXXEFRVYSSANNCTFEYVSXXXXXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPIXXXX: 214 SecStr : BEEEB TT B B EEEEEEEE ------------ EEEES -------------- B EEEEEEETTEEEEEEE B ----: ExpBur :ebbbbbeeeeeebbebbbbebbeebbbee------------eeebeeeeeeeebeeee--------------eebebebbbeeeeebebbeeeeee----: queryA 215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314 : ******************************* ***********************************************************: 6zb4_A_1 215:XLPQGFSALEPLVDLPIGINITRFQTLLALHRXXXXXXXXXSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314 SecStr :- EEEEEEEE EEEEEEEE --------- EEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHTSS SEEEE: ExpBur :-eeeeeebbeeeeebebebebeebbbbbbbee---------eeeeeebebbbbbebeebebbbebeeebebeebbbbeeebbbebbbeeeebebeebeee: queryA 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414 :****************************************************************************************************: 6zb4_A_1 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414 SecStr : EEEE B HHHHHT S BGGG EEEEE S B GGGGGGT SEEEESSS GGGTTS EESSEEEEEEEEEGGGGGGSSSS : ExpBur :beebeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbeee: queryA 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514 :****************************************************************************************************: 6zb4_A_1 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514 SecStr : SHHHHTT SS EEEEEEE TTTS TT EEE SS TT EE SSS SS SSSEE SEEE TTS TTSSEEEEEEEE: ExpBur :eeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeebeeeeeeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbeb: Contact : b b b queryA 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614 :****************************************************************************************************: 6zb4_A_1 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614 SecStr : BSSS EE S SS EEEEETTEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE S EEEEE TTT EEEETT: ExpBur :bebeeeebebbbeeeeeeeeeeebbebbbbbeeeebbbeeeeeeeeeeebbbeeeeeeeebbbbeeeeebbebeebeeebbbbbbbbbeebeeebbbbee: queryA 615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714 :**** ******************************************** **************************: 6zb4_A_1 615:VNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQXXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAI: 714 SecStr : ------------- SSS S B SS EEES EE SS B SEEEETTEEEEE ------------- EEEEEB TTEEE : ExpBur :bebe-------------eeebeeeeeeeeebeebbbbebeeeeeeeeeebebeeebbbbee-------------eeebbbbeeeeeeeeeeeeeeeeeeb: queryA 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814 :****************************************************************************************************: 6zb4_A_1 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814 SecStr : S EEEEEEEEEEE EEE HHHHHTTT SHHHHHHTTT SSHHHHHHHHHHHHHHHHHHHHHHHTT SS SS SS TTTS TTSSS : ExpBur :beebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeeeeeeeeeeeeebebeebbeeeebebe: queryA 815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914 :************** ************ *******************************************************************: 6zb4_A_1 815:RSFIEDLLFNKVTLXXXGFIKQYGDCLGDXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914 SecStr : HHHHHHHTSS --- HHHHS ---- TTTTTTTTEEE SS HHHHHHHHHHHHHHHHHHGGGGGSSS HHHHHHHHHHHTT SH: ExpBur :bbebbebbeeebee---eeeeeeeebeee----eeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeee: queryA 915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014 :************************** ***********************************************************************: 6zb4_A_1 915:VLYENQKLIANQFNSAIGKIQDSLSSXXXALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014 SecStr :HHHHSHHHHHHHHHHHHHHHHHHHT --- HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHTTTS TTTTHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbeeeeeebbeebeebbeebbeebee---ebeebbebbeebeebbbebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeee: queryA 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114 :****************************************************************************************************: 6zb4_A_1 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114 SecStr :HHHHHHHHHHHHHHHHHTTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEE S BBSSSEEEE SSSEEEESSSSEEEE SSS B : ExpBur :beebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbbeeeebebbbeebeeeee: queryA 1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139 :*************************: 6zb4_A_1 1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139 SecStr : TTS EEEEETTS TT B : ExpBur :beeebbeeeeeeeeeeeeeeeebee: |