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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1107 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | RA 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 709N 1131G (identity: 100.0 %/96.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xr8_A_1 identity=96.3% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 6xr8_A_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEEEESS B SSS SEEEEEEEEE TTEEEEEEEEE ------- EE EE S EEEEEEESSS EEEEEEESSSBSS: ExpBur :eebebeeeeeeeeeebebebbbbbbbeeeebeeeeeebeebbbbbeeebebbebee-------ebbbbeebebeebbbbbbbbbeebbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 6xr8_A_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE BEEEEEEEEEE S SSSS EEEEEEEES SEEEEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEES: ExpBur :eebbbbbebbebebbbbbebebbebbbbbbeeeeeeeeeebeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbbeeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :******************************* ************************************************************: 6xr8_A_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALXXXXXXXXXSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS BEEEEEE EEEEEEB --------- S SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT SS SEEE: ExpBur :eebbeeeebbeeeeebebebebeebbbbbbb---------eeeebebeebbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeebebeeeee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 6xr8_A_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EE B EEEEE SB HHHHHS SS BSTT EEEEE SEE GGGGTTT SEEEESSS GGGGGG EESSEEEEEEEEEGGGGGGGSSS: ExpBur :ebeebeeeeeeebbbbbebeeebebeebbeeeebebbbebeeeebeebbbeeeebeeebeeeeeebeebeeeebeebbbbebebbbbbbebebbebbeee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 6xr8_A_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT TT EEEEEEE HHHH TT B EEE SS TT EE SSS SS BTTEE SEEE B TTS TTTSEEEEEEE: ExpBur :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebbbeeebeebebbbbbbbb: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 6xr8_A_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EE SSS EE S SSEEEEEETTEE EEEEE TT EEE TT EEEEE SSS EEEEE SB EEEEE TTT S EEEET: ExpBur :bbebeeeebebbbeeeeeebbeeebbebbbbbbeeebebeebeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbb: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :***** ******************************************** *************************: 6xr8_A_1 614:DVNCTXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T -------------- SS SSEEEETTEEEES EE SS SEEEETTEEEEEE ------------ EEEEEE TTEEE: ExpBur :ebebe--------------eebeeeeeeebebeebbbbebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee: Contact : b queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 6xr8_A_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EES EEEEEEEEEEE EEEE HHHHHHTT HHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT SS SS STT TTTSB TTSSS: ExpBur :bbeebebebeeebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbbebeeeeeeeeeeebeebebebbbeeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :****************************************************************************************************: 6xr8_A_1 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : BHHHHHHHHHS S STT SGGGSTHHHHH HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT T: ExpBur :ebbebbebbbeebeeeeeeeeeeeeebeeeeeeeeebbebeeebbebeeeebeeeebbebbebbbbbbbebbeebeeeeeeebebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 6xr8_A_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHTTHHHHHHHHHHHHHHHHHHHHH S TTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebbeebeeeeeebeebbebbeebeebbbebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbbebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 6xr8_A_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEE EEEEE S EESSSS EEESSSEEEESSS EEEE TTS E: ExpBur :bbeebeebbeebbebbeebbbbbbeeeebbeeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162 :*************************************************: 6xr8_A_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162 SecStr :E BTTTEEE S TTTSTT EE B THHHHHHHHHHHHHHHHHHHH : ExpBur :ebbeeebeeeeeeeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeee: Contact : b |