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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | C 1 (C) | polymer(polypeptide(L)) [1009 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | TA 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 603N (identity: 100.0 %/89.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xf5_C_1 identity=89.4% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6xf5_C_1 16:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 115 SecStr : EEEE S B SSS S EEEEEEEE SSEEEEEE ---------- EE SS EEEEEEESS EEEEEEESS SSSS EEEEE SS E: ExpBur :eebebeebbbbbbeeeebeeeeeebebebbbbeeebbbbeeee----------ebeebebeebbbbbbbbeeebbebbbbbbebeeeebbbbbeeeeeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ******** *****************************************: 6xf5_C_1 116:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXXXXXXXXNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 215 SecStr :EEE S SS EE --------------------- EEE ------------- EEEEEEEEEETTEEEEEEEEEE SS BEEE: ExpBur :bbebbeeebeeebeeee---------------------eeeeeeee-------------beebebbbbbeeeeebbbbbeeeebeeeebbbeeeebbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :******************* ****************************************************************: 6xf5_C_1 216:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 315 SecStr :EEE EEEEEEEE ----------------- EEE EEEEEEEEE TTS EEEEEETTT HHHHHHHHTTSS SEEEEEEEEE SEE: ExpBur :eebebebebeebbbbbbee-----------------bbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeebeeeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xf5_C_1 316:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 415 SecStr :EE THHHHHS S STT EEEEE SEE HHHHH SEEEE SS SSTTTT BSEEEEEEEEEEGGGGGGSSTT SHHHHHT : ExpBur :bbbeeeeeebebeebbeeeebbbbebbeeeebeebebebeebeeeeebeeeebeebeeeebeeebbbbbebbbbbbebebbebbbeeeeeebbeebbbbe: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************************************************************************************************: 6xf5_C_1 416:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 515 SecStr :SS EEEEEEE TTTS SS BTT EEE SS SS EE SSS SS BTTEE SEEE B TTS GGGSEEEEEEEEEE SSS EE : ExpBur :eebebbbbbbebbeebbeeebbeebebbbebeeebeeeeebeeeebeeebeeebeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbeeeeeebebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :*********************************************************************************************** : 6xf5_C_1 516:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPXXXXX: 615 SecStr : SSEEEEEETTEEEEEEEEE TT EEE TT EEEEE SSS EEEEE EEEEEEEE TTT EEEEET TTT -----: ExpBur :eeeeeebeeeebbebbbbbbeeebbbeebeeebeeeebbbeeeeeeeebbbbbeeeeebbbeebeebebbbbbbbbeebeeebbbeeebeeeebe-----: Contact : b queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : ************************************* **************************************: 6xf5_C_1 616:XXXXXXXXXXXXXSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 715 SecStr :------------- EEEETTEEEES EE SS B SEEEETTEEEEEE ------------ EEEEEEB TTEEEEEEEEEEEEEEEE: ExpBur :-------------eeeeebebbbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xf5_C_1 716:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 815 SecStr :EE EEE HHHHHSTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS TTSSS HHHHHHHHH : ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbeeeeeebeebebbbbbbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :* *************************************************************************: 6xf5_C_1 816:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 915 SecStr : -------------------------- SSEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHTTT HHHHHHTHHHHHHH: ExpBur :e--------------------------eeebbeeeeeebeeeebbeebebbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xf5_C_1 916:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1015 SecStr :HHHHHHHHHHHHHH TTTTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebeebbeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xf5_C_1 1016:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1115 SecStr :HHHHHHTSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SSSEEEE TTS B BTTTEEEEEET: ExpBur :ebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebebbbeeeebbbbbebbbeeeebbeebbeeeeeb: queryA 1127:DVVIGIVNNTVYDPLQPELDSFKEEL:1152 :**************************: 6xf5_C_1 1116:DVVIGIVNNTVYDPLQPELDSFKEEL:1141 SecStr :TTSSS EE B SSHHHHHHHHHH : ExpBur :eeeeeeeeeebeeeeeeeeebeeeee: |