#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [859 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | F 1 (A) | non-polymer(GO3) | Gossypol | 408Q 499D 500K 507N 543N (identity: 100.0 %/95.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8gy6_A_1 identity=95.2% |
queryA 31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA: 130 :******************** ****** *************************** *******************: 8gy6_A_1 31:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXYFVVKRXTFSNYQHEETIYNLLKDCPAVAKHDFFXXXXXXXXXPHISRQRLTKYTMADLVYA: 130 SecStr : B EESSS EE S B ------------------ - HHHHHHHHHHHHS STTB B --------- B S SSBHHHHHHH: ExpBur :eebbbbeeeeebbbbbebee------------------eeeebe-eeeeeebbeebeeebeebebbbebeee---------eebbbeebbebbbbbbbbb: queryA 131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230 :****************************************************************************************************: 8gy6_A_1 131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230 SecStr :HHS SSS HHHHHHHHHTTSS GGGTTSTTTT SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEEEE STTBBSS B SSEE TT : ExpBur :bbbbebeebebbeebbbeeebbeeebbeeeebbbbbebeebeebbeebbeebbebbbbbbebbebbeebbbebebbbbbbbbbbbbbebbebeeeeeeeb: queryA 231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330 :****************************************************************************************************: 8gy6_A_1 231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330 SecStr : EE HHHHHHTGGGTTTTTGGGGGGBTTSSSSS B TT HHHHHHHHHHHTTT S SSGGGS SSTTHHHHHHHHHHHTSSS GGG EEEE: ExpBur :ebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebeeebeebbeebbebbebebbbbbeebeebbbbbbbbbbbbbbbebbeeebbeeee: queryA 331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430 :****************************************************************************************************: 8gy6_A_1 331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430 SecStr : EEETTEEE EEEEE SSS EEE S S S HHHHHHHHTSSHHHHTSSEE SS SS B EESSSS B HHHHHHHHHTT S : ExpBur :eebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeeebebbeebbbbeeeeeeeebebeebeeebbbbeeeeeeeeebeebeebeebeebbeeeebee: Contact : b queryA 431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530 :****************************************************************************************************: 8gy6_A_1 431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530 SecStr :TT SS B SS HHHHHGGGGG TTTHHHHHHHHHHHTTTS STTS S SS HHHHTT HHHHHHHS HHHHHHHHHH: ExpBur :eeeebeeeeebeeeeeebbbebbeebebbbebbbbbbbbbbbbbbbebbbeebebbbbebeebeeeeeeeebbbbbeeeeebeebeeebeeeebeebbeb: Contact : bb b queryA 531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630 :****************************************************************************************************: 8gy6_A_1 531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630 SecStr :HHH EE EEEE BSSSS EEEE HHHHHHHHHHHHHHHHHHSS S SB TT SSSSHHHHHHHHHTSS SSB EE TTHHHH SHH: ExpBur :bbebbbbbbbbbebeeebeeeeeeebebbbbbbbebbbbbbbbebbeebeeeeebbbbbeeeebbbbbbebbeebbeebeeeebbbbebeebebbbbbbb: Contact : b queryA 631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730 :****************************************************************************************************: 8gy6_A_1 631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730 SecStr :HHHHHHHTTGGGTTTS HHHHHHHHHHHHHHSSS EEEETTEEEE S TT HHHHHHHHHHHHHHHHHHHHHHHHTS TTT TTHHHHHHHHHH: ExpBur :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbeebbbebebbbbebbebbbbbbbbbbbbbbbbbbbbbbbbbebeebeeeebbebbbebbeb: queryA 731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830 :****************************************************************************************************: 8gy6_A_1 731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830 SecStr :HTT S HHHHHHHHHHHHHHEEEEEETTEEEEEEBHHHHHHS S SSHHHHHHHHHHS GGG TTS S BTTBEEEEEETTS EEEEE: ExpBur :bbeeeeeeeebbeebbebbeebbbbbbbeeebbbbbbbebeeeebbbbeebbbbbbbbbbbbbbeeeebbebeebeebbeebeebebbebeeeeeebbbb: queryA 831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTV: 930 :***************************************************************** ********************: 8gy6_A_1 831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHTV: 930 SecStr :E HHHHHHHHT B S SS THHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH --------------- S SSSHHHHHHTTSTT : ExpBur :bbebbebbbbbbbbeeebeeeeeebbeebbebbbbbbbbeebeeeeebebbebbbebbeeeeeee---------------eeeeebeeebbeebbbbeee: queryA 931:LQ: 932 :**: 8gy6_A_1 931:LQ: 932 SecStr : : ExpBur :ee: |