#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [906 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | E 1 (T) | polymer(polyribonucleotide) | RNA (5'-R(P*CP*CP*UP*AP*UP*AP*AP*CP*UP*UP*AP*AP*UP*CP*U)-3') | 408Q 496N 500K 501S 507N 541Q 543N 545K 557V 558A 569R 577K 580A 590G 592S 594F 595Y 682S 683G 684D 685A 689Y 857E 860V 864I 915Y 920F 924M (identity: 100.0 %/97.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7doi_A_1 identity=97.8% |
queryA 4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103 :****************************************************************************************************: 7doi_A_1 5:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 104 SecStr : HHHHHHHHGGG EEESSSTTS EEEEEEEE SS EEEEEEEE SEEEEEEE TTS EEEEEEEEE SHHHHHHHHHHHHHTT TTB EEEEE: ExpBur :eeebbeebbeeeebebeeebeeeeeeebebbbbeeeeebbbbbbbeeeebbbbbbeeeeeeeeeebbbbbbeeeebbeebeebbeebeebebbbebbbbe: queryA 104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203 :**** **********************************************************************************************: 7doi_A_1 105:FRIDXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 204 SecStr :E -- EEEEEEEEE SSBHHHHHHHHHS TTS HHHHHHHHHTTSS GGGGGSTT S TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTEEE: ExpBur :beee--eebbbbbbebbebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbeb: queryA 204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303 :****************************************************************************************************: 7doi_A_1 205:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 304 SecStr :E GGGBBTT B TT EE TT EE HHHHHHHHHHHHHTTTTGGGGBGGG TTS B TT HHHHHHHHHHH TT S SSGGG SS: ExpBur :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebee: queryA 304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403 :****************************************************************************************************: 7doi_A_1 305:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 404 SecStr :HHHHHHHHHHHHHHTTTS TTSSEEEEEEEEETTEEEEEEEEEEETTTEEEE S SEES HHHHHHHHH HHHHHHHSEE S SS EEEESSS: ExpBur :bbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeeebebbbbbbbbebeeeeeebebeebebebebbeee: queryA 404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503 :****************************************************************************************************: 7doi_A_1 405:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 504 SecStr :S B EE HHHHHHHHHTT S TT S B B TTHHHHHHGGGGS HHHHHHHHHHHHHHTTT STT S SSS : ExpBur :eeeeeebeeeeebeebeebbeeeebeeeebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeeeeeebb: Contact : b b bb queryA 504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603 :****************************************************************************************************: 7doi_A_1 505:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 604 SecStr :TTGGGT HHHHHHHS HHHHHHHHHHTTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHHT SSSB TT STTTHHHHHHH: ExpBur :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbebbbbebbeebeeeeebbbbbeeebeebbbbebbe: Contact : b b b b bb b b b b b bb queryA 604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703 :****************************************************************************************************: 7doi_A_1 605:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 704 SecStr :HHSSS SSEEEEE TTTTTS HHHHHHHHHHHGGG TTT HHHHHHHHHHHHHHHTS EEESSSEEEE SS TTSTTHHHHHHHHHHHHHHHHH: ExpBur :ebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbebebbbbeebebbebbbbbbbbbbbbbbb: Contact : bbbb b queryA 704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803 :****************************************************************************************************: 7doi_A_1 705:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 804 SecStr :HHHHHSS GGG HHHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHTTS TTS EEES: ExpBur :bbbbbbbbbeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebe: queryA 804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903 :******************************************************************************************** : 7doi_A_1 805:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXX: 904 SecStr : TTS S BTTEEEEEEEETTEEEEEEEE HHHHHHHHHEESSTTSSSSSSHHHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHS --------: ExpBur :ebeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeebeeeeebbeebbebbbebbbbeeeeeeebbebbebbbebbeebeeee--------: Contact : b b b queryA 904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929 : ****************: 7doi_A_1 905:XXXXXXXXXXRYWEPEFYEAMYTPHT: 930 SecStr :---------- SSTHHHHTTTSS : ExpBur :----------eeeeeebbeebbeeee: Contact : b b b |