#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [814 aa] | RNA-directed RNA polymerase nsp12 :R1AB_SARS2 | |
2 | b | E 1 (T) | polymer(polyribonucleotide) | RNA (5'-R(P*UP*GP*CP*AP*UP*CP*GP*CP*GP*UP*AP*G)-3') | 496N 500K 501S 507N 541Q 543N 545K 555R 557V 558A 559G 569R 577K 580A 589I 590G 592S 594F 595Y 682S 683G 684D 685A 687T 689Y 861S 915Y 924M (identity: 100.0 %/97.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7b3b_A_1 identity=97.8% |
queryA 31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQ-------------: 117 :******************** : 7b3b_A_1 34:VYRAFDIYNDKVAGFAKFLK-------------------------------------------------------------------XXXXXXXXXXXXX: 66 SecStr : EEEEEEESSS EEEEEEE --------------------------------------------------------------------------------: ExpBur :eeebbbbeeeebbbbbebee--------------------------------------------------------------------------------: queryA 118:------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 163 : **********************************************: 7b3b_A_1 67:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 166 SecStr :------------------------------------------------------ SSBHHHHHHHHHS BTTB HHHHHHHHHTTSS HHHHHSTTSS: ExpBur :------------------------------------------------------eebebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebb: queryA 164:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 263 :****************************************************************************************************: 7b3b_A_1 167:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 266 SecStr : TTT TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEE B GGGBBTTS B SS EE STT B HHHHHHHHHHHHHTTGGGGGGBGGG SSS: ExpBur :bbbebeebbebbeebbbebbebbeebbebbeebeeebeebbbbbbbbbbebebebeeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeee: queryA 264:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS: 363 :************************************************************************************************** : 7b3b_A_1 267:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLXX: 366 SecStr : B TT HHHHHHHHHHHSTT S SSGGG SSHHHHHHHHHHHHHHHTTS SSSSEEEEEEEEETTEEEEEEEEEEETTTEEEE TT --: ExpBur :eeeeeeeeeeebbebbeebbeebbebbebebbbbbeebeebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeee--: queryA 364:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 463 : *************************************************************************************************: 7b3b_A_1 367:XXXSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 466 SecStr :--- HHHHHHHHHSHHHHHHTSEE TT SS EEEESSSS B EE HHHHHHHHHTT S TT S B B TTHHHHHHHGGGG : ExpBur :---eeeeebbbebbbbebeeebeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbeeeeebebebebeebeeebbbebbbebebbbebb: queryA 464:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 563 :****************************************************************************************************: 7b3b_A_1 467:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 566 SecStr : HHHHHHHHHHHHHTTSSS GGG S SSSB TTGGGT BHHHHHHHS HHHHHHHHHHHTTS EEEEEE BSSS EEEE HH: ExpBur :bbbbbbbbbbbbbbebbeebebbebebeebeeeeeeeebbbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebeeeeebebebebbbb: Contact : b bb b b b b b bbb queryA 564:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 663 :****************************************************************************************************: 7b3b_A_1 567:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 666 SecStr :HHHHHHHHHHHHHHHHHT SSSB TT STTTHHHHHHHHHTTT SSEEEEE TTHHHH HHHHHHHHHHHHTT TTT HHHHHHHHHHHHHHTT: ExpBur :bbbbbebbbbebbebbeeeeebbbbbebebeebbbbebbeebbeebeeeebbbbebbbbebbbbbbbbbbbbbbbbeebeeebeeeebbbbbbbbbbbbb: Contact : b b b bb b bb queryA 664:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 763 :****************************************************************************************************: 7b3b_A_1 667:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 766 SecStr :T EEESSSEEEE SS SSSTTHHHHHHHHHHHHHHHHHHHHHHHS SSS HHHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEE SS EE: ExpBur :bbbbbbebbbbbbebbbbeebebeebbbbbbbbbbbbbbbbbbbbbbebeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebeebb: Contact : bbbb b b queryA 764:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 863 :****************************************************************************************************: 7b3b_A_1 767:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 866 SecStr :EEEEHHHHHHTSS HHHHHHHHHHTT GGG EEES TTT S BTTEEEEEEEETTEEEEEEEE HHHHHHHHHEESSSTTSSSSHHHHHHHHHH: ExpBur :bbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeeeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebeeeebbeebbebb: Contact : b queryA 864:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT: 929 :********************************* ********************: 7b3b_A_1 867:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXXXXXXXXXXXDNTSRYWEPEFYEAMYTPHT: 932 SecStr :HHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHH ------------- TTHHHHSTHHHHHTTSTT : ExpBur :bebbbbeebeeeebbebbebbbebbeebeeeee-------------eebeeebeeeebeebbeeee: Contact : b b |