Protein Model on 8h16_C_1_B_1
(TEMPLATE: 
8h16
)Protein Model on 8h16_C_1_B_1
(TEMPLATE: 8h16
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [983 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | B 1 (A) | polymer(polypeptide(L)) [805 aa] | Spike glycoprotein :SPIKE_SARS | 304N 306R 342R 368G 369V 370S 373K 377L 383Y 450P 451F 452E 453R 455I 502E 503L 505N 531G 533T 535T 543K 544R 545F 546Q 548F 549Q 551F 552G 553R 555V 556S 557D 558F 575P 577S 578F 600D 651P 653G 654A 655G 679M 681L 683A 684D 685S 686S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 943T 946K 947Q 950S 951N 952F 953G 984Q 999E 1021R 1022V 1027K 1028G 1029Y 1054E 1056N 1059T 1071F 1089R 1105S 1110V (identity: 100.0 %/89.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h16_C_1 identity=89.9% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** *****************************************************:
8h16_C_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr : EEEETT EE SS SEEEEEEEEE TTEEEEEE ------- EE SSEEEEEEEESS EEEEEEESSSSSSS EEEEEE SS EEEEEEE :
ExpBur :eebebbebbbbbbeeeeeeeeeeebeebbbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeeeebbbbeeeeeeebbebbbb:
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:**** ************ ***************************************************:
8h16_C_1 121:ELCDXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220
SecStr : -------------------- EEEEEEEEE ------------- EEEEEEEEEETTEEEEEEEEE S SSS EEEEEEEE E:
ExpBur :eeee--------------------eeeeeeeeeeee-------------eebbbbbbbeeeeebbbbebeeebeeeeebeeeebbbeeeeebebebebee:
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:****** *********************************************************************************:
8h16_C_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ------------- EEEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHT S SEEEEEEEE B EEEE B HHHHHS:
ExpBur :bbbeee-------------ebbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeebebeebeeebeebebeeeeebbbbbebeeebebeebbe:
Contact : b b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*************************************************************************************************** :
8h16_C_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDX: 420
SecStr : S GGG EEEEE SBB HHHHS S SEEEEESS GGGTTT EESEEEEEEEEE STTSSSSSTT SHHHHHT TT EEEEEEE SS -:
ExpBur :eeebbbbeebeeeebeebbbebeebeeeeebeeeebeebebeebeeebbbbbebbbbbbbbebeebbbeeeebebbbebbebbeebebbbbbbebeeee-:
Contact : b bbb b b b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ****************** ******* *****************************************:
8h16_C_1 421:XXXXXXXYKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXPLNDYGFXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr :------- EEE SS TT --------------------- EEE ------ EEEEEEEEE SSSS EE SS EEEEET:
ExpBur :-------eeebeeeeeebeeeeeee---------------------eeeebee------eeebbbbbbbbbeebeeebbbbbeeeeeeeeeeebbebbbb:
Contact : bbbb b bb b
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h16_C_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr :TEEEEEEEEE SS EEE TTS EEEEE TTT EEEEE EEEEEEES TTT S EEEEES THHHHHHHHTT BSS SS S EEE:
ExpBur :eeeeebebeeeeeebeeeebeeeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebebebeeeebeeeeee:
Contact :b b b bbbb bb bbb bbbb b bb b
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h16_C_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr : SSEEEES EE S SEEEETTEEEEEE -------- EEEEEE S TTEEEEEEEEEEEEEEEEEE EE HHHHHTSS HH:
ExpBur :beebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebeeebebebeeebbbbbbebbebebeebbbeebee:
Contact : b bbb b b bbbbbbbbb bbb b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** ******* :
8h16_C_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXKQYGECLXXXXXXX: 820
SecStr :HHHHGGGG S HHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SS S S HHHHHHHHHS ------ S B -------:
ExpBur :beebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeebeebebeebebebbbbeeeeeeeebebbebbbeebee------eeebeee-------:
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
: ***************************************************************************************************:
8h16_C_1 821:XICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr :- B TT EE SS HHHHHHHHHHHHHHHHHTTTGGGSSS HHHHHHHHHHHTT HHHHHHTHHHHHHHHHHHHHHHHHHHHS STTHHH:
ExpBur :-eeeeeebbbebeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebeeebeeeeeebeeb:
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:****************************************************************************************************:
8h16_C_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebbeebeebbeebbeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbbebeeeebbbeeeb:
Contact : b bb bbbb b b bb bbb
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h16_C_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SSSEEEE SSS B BTTTEEE S TTSSTT EE B :
ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeeebbbbeebeeeeebbeeebeeeeeeeeeeeeeeeebeeee:
Contact : b b b b b b b
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[assembly_id:1]
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