Protein Model on 8h16_C_1_A_1
(TEMPLATE: 
8h16
)Protein Model on 8h16_C_1_A_1
(TEMPLATE: 8h16
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [983 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | A 1 (B) | polymer(polypeptide(L)) [966 aa] | Spike glycoprotein :SPIKE_SARS | 42Y 45E 46I 47F 112Q 129N 160T 191D 192G 193F 217K 221K 225G 227N 270G 271T 719D 721N 722M 737Q 738Y 739G 740S 741F 744Q 768K 769Q 770M 771Y 772K 779F 818Q 835Q 836K 837F 839G 841T 845P 846L 848T 851M 854A 855Y 865T 866A 872A 874A 875A 876L 877Q 879P 880F 882M 886Y 895Q 896N 899Y 900E 945V 948L 949S 957S 958V 960N 964S 965R 966L 967D 994L 1001R 1012S 1013E 1021R (identity: 100.0 %/89.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h16_C_1 identity=89.9% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** *****************************************************:
8h16_C_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr : EEEETT EE SS SEEEEEEEEE TTEEEEEE ------- EE SSEEEEEEEESS EEEEEEESSSSSSS EEEEEE SS EEEEEEE :
ExpBur :eebebbebbbbbbeeeeeeeeeeebeebbbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeeeebbbbeeeeeeebbebbbb:
Contact : b bbb b b
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:**** ************ ***************************************************:
8h16_C_1 121:ELCDXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220
SecStr : -------------------- EEEEEEEEE ------------- EEEEEEEEEETTEEEEEEEEE S SSS EEEEEEEE E:
ExpBur :eeee--------------------eeeeeeeeeeee-------------eebbbbbbbeeeeebbbbebeeebeeeeebeeeebbbeeeeebebebebee:
Contact : b bbb b b b b
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:****** *********************************************************************************:
8h16_C_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ------------- EEEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHT S SEEEEEEEE B EEEE B HHHHHS:
ExpBur :bbbeee-------------ebbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeebebeebeeebeebebeeeeebbbbbebeeebebeebbe:
Contact : bb
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*************************************************************************************************** :
8h16_C_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDX: 420
SecStr : S GGG EEEEE SBB HHHHS S SEEEEESS GGGTTT EESEEEEEEEEE STTSSSSSTT SHHHHHT TT EEEEEEE SS -:
ExpBur :eeebbbbeebeeeebeebbbebeebeeeeebeeeebeebebeebeeebbbbbebbbbbbbbebeebbbeeeebebbbebbebbeebebbbbbbebeeee-:
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ****************** ******* *****************************************:
8h16_C_1 421:XXXXXXXYKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXPLNDYGFXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr :------- EEE SS TT --------------------- EEE ------ EEEEEEEEE SSSS EE SS EEEEET:
ExpBur :-------eeebeeeeeebeeeeeee---------------------eeeebee------eeebbbbbbbbbeebeeebbbbbeeeeeeeeeeebbebbbb:
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h16_C_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr :TEEEEEEEEE SS EEE TTS EEEEE TTT EEEEE EEEEEEES TTT S EEEEES THHHHHHHHTT BSS SS S EEE:
ExpBur :eeeeebebeeeeeebeeeebeeeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebebebeeeebeeeeee:
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h16_C_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr : SSEEEES EE S SEEEETTEEEEEE -------- EEEEEE S TTEEEEEEEEEEEEEEEEEE EE HHHHHTSS HH:
ExpBur :beebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebeeebebebeeebbbbbbebbebebeebbbeebee:
Contact : b bb
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** ******* :
8h16_C_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXKQYGECLXXXXXXX: 820
SecStr :HHHHGGGG S HHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SS S S HHHHHHHHHS ------ S B -------:
ExpBur :beebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeebeebebeebebebbbbeeeeeeeebebbebbbeebee------eeebeee-------:
Contact : bbbbb b bbbbb b b
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
: ***************************************************************************************************:
8h16_C_1 821:XICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr :- B TT EE SS HHHHHHHHHHHHHHHHHTTTGGGSSS HHHHHHHHHHHTT HHHHHHTHHHHHHHHHHHHHHHHHHHHS STTHHH:
ExpBur :-eeeeeebbbebeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebeeebeeeeeebeeb:
Contact : bbb b b bb b b bb bb b bbbb bb b b bb bb
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:****************************************************************************************************:
8h16_C_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebbeebeebbeebbeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbbebeeeebbbeeeb:
Contact : b bb bb b bbbb b b bb b
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h16_C_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SSSEEEE SSS B BTTTEEE S TTSSTT EE B :
ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeeebbbbeebeeeeebbeeebeeeeeeeeeeeeeeeebeeee:
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[assembly_id:1]
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