Protein Model on 8h16_A_1_C_1
(TEMPLATE: 
8h16
)Protein Model on 8h16_A_1_C_1
(TEMPLATE: 8h16
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (B) | polymer(polypeptide(L)) [966 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [983 aa] | Spike glycoprotein :SPIKE_SARS | 304N 306R 368G 369V 370S 372T 373K 377L 383Y 417M 450P 451F 452E 453R 455I 502E 503L 505N 531G 533T 534G 544R 545F 546Q 548F 549Q 551F 552G 553R 555V 556S 557D 558F 575P 576C 577S 578F 600D 601V 651P 653G 654A 655G 681L 682G 683A 684D 685S 686S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 943T 947Q 950S 951N 952F 953G 992Q 999E 1021R 1022V 1028G 1029Y 1054E 1056N 1059T 1061P 1071F 1072P 1089R 1103F 1105S 1110V (identity: 100.0 %/88.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h16_A_1 identity=88.4% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** ***************************************** ******* :
8h16_A_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINXXXXVVIRACNX: 120
SecStr : EEEE SEEEE SS S EEEEEEEE TTEEEEEE ------- EE SSEEEEEEEESS EEEEEEESSSSSSS EEEEE ---- EEE -:
ExpBur :eebebbebbbbbbeeeeeeeeeeebeebbbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbeeeeebebbebee----eebeeee-:
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
: **** ***************************************************:
8h16_A_1 121:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220
SecStr :-------------------------------- EE ------------- EEEEEEEEEETTEEEEEEEEEE S SS EEEEEEEEEE E:
ExpBur :--------------------------------eeee-------------ebbebbbbbeeeeebbbbebeeebeeeeebeeeebbbeeeeebebeeebee:
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:****** *********************************************************************************:
8h16_A_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S SEEEEEEEEEB EEEE S B HHHHHS:
ExpBur :bebeee-------------ebbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeebeeebeebebeeeeebbbbeebeeebebeebbe:
Contact : b b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*************************************************************************************************** :
8h16_A_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDX: 420
SecStr : S BGGG EEEEE SBB HHHHSSS SEEEEESS GGGGGT EES EEEEEEEE GGGGGG STT SHHHHHT TT EEEEEEE TTT -:
ExpBur :eeebebbeebeeeebeebbbebbebeeeeebeeeebeebebeebeeebbbbbebbbbbbebebbebbbeeeeeebbbebbebbeebebbbbbbebeeee-:
Contact : bbb bb b b b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ****************** ******* *****************************************:
8h16_A_1 421:XXXXXXXYKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXPLNDYGFXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr :------- EEE SS TT --------------------- EEE ------ EEEEEEEE SSS EE SS EEEEET:
ExpBur :-------eebbeeeeeebeeeeeee---------------------eeeebee------eeeebbbbbbbbeebeeebbbbbeeeeeebeeeebbebbbb:
Contact : bbbb b bb b
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h16_A_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr :TEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE EEEEEEEES TTT S EEEEET HHHHHHHHHTT BSS SS S EEE:
ExpBur :eeeeebebeeeeeebeeeebeeeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebebebeeeebeeeeee:
Contact :b bb bbb bb bbb bbbb bbbb bb
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h16_A_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr : SSEEEES EE SS SEEEETTEEEEEE -------- EEEEEE S TTEEEEEEEEEEEEEEEEEE EEEE HHHHHTTT HH:
ExpBur :bebbbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:
Contact : b bbb bbbbbbbbbbb bbb b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** ******* :
8h16_A_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXKQYGECLXXXXXXX: 820
SecStr :HHHHHGGG S HHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTSS S HHHHHHHHH ------ S -------:
ExpBur :beebbeeeeebbeebeeebeebbebbeebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeeebebbbbbbeebee------eebbeee-------:
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
: ***************************************************************************************************:
8h16_A_1 821:XICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr :- TT EEEE SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHHTT HHHHHHTHHHHHHHHHHHHHHHHHHHHS TTHHH:
ExpBur :-eeeeeebbbebeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebbeebeeeeeebeeb:
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:****************************************************************************************************:
8h16_A_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHTTS TTSS SSHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS STTTS SSEE:
ExpBur :eebbeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbebbeeeebbbeeeb:
Contact : b b bbbb b b bb bb
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h16_A_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEE SSSEEEE SSS B BTTTEEE S TTSSTT EE B :
ExpBur :bbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeebeeeeeeeeeebeeee:
Contact : b b b b bb b b b b
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[assembly_id:1]
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