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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [968 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | D 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 105S 227N (identity: 100.0 %/88.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h15_A_1 identity=88.7% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** **************** ***********************************: 8h15_A_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEXXNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEEETT EE SS SEEEEEEEEE TTEEEEE ------- EE SS EEEEE -- EEEEEEESSSSTTS EEE B SS EEEEEE : ExpBur :eebebbebbbbbbeeeeeeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbe--eebebbbbbeebeeebebbbbeeeeeeebbebbbb: Contact : b queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :** ************ *********************** ***********************: 8h15_A_1 121:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXXHLREFVFKNKDGFLYVYKGYQPIXXXXDLPSGFNTLKPIFKLPLGINITN: 220 SecStr : ---------------------- S EEEEE -------------- EEEEEEEEETTEEEEEEEEE ---- EEEEEEEE SE: ExpBur :ee----------------------eeeeeebeeeee--------------ebebbbbbeeeeebebbebebee----ebeeeebbbeeeeebebebebee: Contact : b queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :****** *********************************************************************************: 8h15_A_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ------------- EEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S SEEEEEEEEEB EEEE B HHHHS: ExpBur :bebeee-------------ebbbbbebeebebbbebbeebebeebbbbebebbbebbbeeeebebeebeeebeebebeeeeebbbbbeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*********************************************************************************************** : 8h15_A_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTXXXXX: 420 SecStr : S GGG EEEEE SBB TTTSSSS SEEEEESS GGGTTT EES EEEEEEEE STTSGGGSTT SSHHHHT TT EEEEEEE -----: ExpBur :eeebebbbebeeeebeebbbebbebeeeeebeeeebeeeebeebeeebbbbbebbbbbbebebbebbebeeeeebbbebbebbeebebbbbbbee-----: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 : ****************** ***** *****************************************: 8h15_A_1 421:XXXXXXXYKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXPLNDYXXXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr :------- EEE SS TT --------------------- EEE -------- EEEEEEEE SSS EE S SSEEEEEET: ExpBur :-------eebbeeeeeebeeeeeee---------------------eeeee--------eeeebbbbbbbbeeeeeebebbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h15_A_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620 SecStr :TEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE EEEEEEEES TTT S EEEEET THHHHHHHHTT BSS SS S EEE: ExpBur :eeeeebbbeeeeeebeeeebeeeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeebbbbbeebebeebeebeeeeebebebeeeebeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h15_A_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SSEEEET EE S SEE SSSEEEEEE -------- EEEEEE SSEEE EEEEEEEEEEEE EEEE HHHHHTSS SH: ExpBur :bebbbbbebeeeeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :******************************************************************************** ******* *: 8h15_A_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXKQYGECLXXXXXXD: 820 SecStr :HHHHGGGG SSHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTSS TTSSSS HHHHHHHHHS ------ ------ : ExpBur :beebbeeeeebbeebeeebeebbebbbebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeeebebbbbbbebbee------eebbeee------e: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h15_A_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr : TT EEEE SS HHHHHHHHHHHHHHHHHHTTTTTTSS HHHHHHHHHHHHT THHHHTSHHHHHHHHHHHHHHHHHHHHTT HHH: ExpBur :eeeeeeebbbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :****************************************************************************************************: 8h15_A_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebbeebbeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1121 :*******************************************************************************************: 8h15_A_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1111 SecStr :EEEEEEEETTEEEEEEEEEEEE EEEEES EESSSSEEEESSSEEEE SSSEEEE TTS B BSSSEEE S TTSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeebeeeeebeeeebee: |