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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [931 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | C 1 (C) | polymer(polypeptide(L)) [931 aa] | Spike glycoprotein :SPIKE_SARS | 301Q 304N 306R 368G 369V 370S 373K 377L 383Y 402T 451F 533T 544R 545F 548F 549Q 551F 552G 553R 554D 556S 557D 558F 575P 578F 599Q 600D 633A 651P 654A 655G 679M 681L 683A 685S 686S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 946K 947Q 950S 951N 952F 969V(C) 988T 992Q 999E 1021R 1022V 1023D 1054E 1059T 1061P 1071F 1076V 1089R 1103F 1105S 1110V 1111V 1112I (identity: 98.6 %/85.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h13_B_1 identity=85.0% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** ********* ********** ************** : 8h13_B_1 17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXXXXXXXKDGIYFAATXXXXVVRGWVFGSTXXXXXQSVIIINNSTNVVIXXXXX: 116 SecStr : EEEE S EE SS SS EEE SEE TTEEEEEE ------------- EEEEE ---- EEEEEES ----- EEEEE SS EE -----: ExpBur :eeeebbebbbbbbeeeebeeeeeebeebbbbbebebebee-------------eeebbbbbe----eebbbeeeee-----eeeebeeeeeeeeb-----: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 : ****** ********************************************* : 8h13_B_1 117:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLXXXXXX: 216 SecStr :------------------------------ EE ------------- EEEEEEEEEETTEEEEEE EE SS EEEEEEEE ------: ExpBur :------------------------------eeeeee-------------eebebbbbbeeeeebebbebeeeeeeeeeeeeeeebbeeeeebee------: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h13_B_1 217:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316 SecStr : EE ----------- EEEEE EE EEE TT S EE SSS HHHHHHHHHTSS SEEEEEEEEEB S EEE HHHHS: ExpBur :eebeeee-----------eebbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeebeeebeebebeeeeebbbbeeeeeebebeebbe: Contact : b b b queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :************************* ************************************ **************************** : 8h13_B_1 317:ATKFPSVYAWERKKISNCVADYSVLXXXXXXXXFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIXX: 416 SecStr : S SSS EEEE SEE TT -------- EESSS SGGGGTS BS EEEE EE SGGGGG STT HHHHHH SS SEEEEEE --: ExpBur :eeebebbeebeeeebeebbbebeee--------eeeeebeeeebeeebbeebebbbbbbebebeebbbeeeebeebeeebebbeebebbbbeeebeee--: Contact : bbb b b b b queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 : ******************* ************************* **************************: 8h13_B_1 417:XXXXNYNYKYRYLRHGKLRPFERXXXXXXXXXXXXXXXXXXXXXXXPLNDYGFYTTTGIGYQPYRVVVLSFXXXNAPATVCGPKLSTDLIKNQCVNFNFN: 516 SecStr :---- TT EEE SS SS ----------------------- EEE STTS S S EEEEEEE --- EE SS EEEEET: ExpBur :----eeebebeeeeeeebeeeee-----------------------eeeebebeeeeeeeebbebbbbbeb---eeeeebbbeeeeeebeeeebbebbbe: Contact : b queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h13_B_1 517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616 SecStr :TEEEEEEEE TT EEE SSS EEEEE TTT EEEEE SEEEEEEEES TTT S EEEEES THHHHHHHHTT BSS SS S EEE: ExpBur :eeeeebbbeeeeeeeeeeeeebeeeeeeeebbebeeeeeebbbeebbebbbbbbbbbbeeeeebbbbbeebebeebeebeeeeebeeebeebeeeeeebe: Contact : b bb bb bbbb bbb b b bb queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h13_B_1 617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716 SecStr : SSEEEES EE S B SEEEETTEEEE -------- EEEEB S TTEEEEEEEEEEEEEEEEEE EE HHHHHS S HH: ExpBur :beebbbbbbeebeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeeeeb: Contact : b b bb b b b bbbbbbb bbb b queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :****************************************************************************** : 8h13_B_1 717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXX: 816 SecStr :HHHHHHHSTT HHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SSSSS HHHHHHHTT ----------------------: ExpBur :beebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeeeebebbebeebbbeeeeeeebbebbbbbeeee----------------------: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 : ***********************************************************************************************: 8h13_B_1 817:XXXXXKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916 SecStr :----- TT EE SS HHHHHHHHHHHHHHHHHHTT SSSSS HHHHHHHHHHHHT HHHHHHSHHHHHHHHHHHHHHHHHHHHH S S HHH: ExpBur :-----eebeeeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeebeeebbeebeebbeebbeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************** *************************************************************: 8h13_B_1 917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016 SecStr :HHHHHHHHHHHHHHHHHTT TTSS S HHHHHTTS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbebbeeeebbbeeeb: Contact : b b bb bbb b b b b bbb queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h13_B_1 1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEESEEESSS EEEESSSEEE TTSS EEE SSS B BSTTEEE S TTSSTTEEE B : ExpBur :bbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbeeeeebbbbbebbbbeeebbeeebeeeeeeeeeeebeeeebeeee: Contact : b b b b b b b b bbb |