Protein Model on 8h13_A_1_D_1 (TEMPLATE: 8h13 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) A 1 (A) polymer(polypeptide(L)) [931 aa] Spike glycoprotein :SPIKE_SARS
2 b D 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 1080N 1082T 1085F 1094P (identity: 100.0 %/85.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8h13_A_1 identity=85.0%
queryA        31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
                :****************************************             *********    **********     **************     :
8h13_A_1      17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXXXXXXXKDGIYFAATXXXXVVRGWVFGSTXXXXXQSVIIINNSTNVVIXXXXX: 116
SecStr          : EEEE S  EE  SS   SS EEE  SEE  TTEEEEEE -------------   EEEEE ---- EEEEEES  -----  EEEEE SS EE -----:    
ExpBur          :eeeebbebbbbbbeeeebeeeeeebeebbbbbebebebee-------------eeebbbbbe----eebebeeeee-----eeeebeeeeeeeeb-----:    

queryA       131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
                :                              ******             *********************************************      :
8h13_A_1     117:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLXXXXXX: 216
SecStr          :------------------------------   EE ------------- EEEEEEEEEETTEEEEEE  EE    SS      EEEEEEEE  ------:    
ExpBur          :------------------------------eeeeee-------------eebebbbbbeeeeebebbebeeeeeeeeeeeeeeebbeeeeebee------:    

queryA       231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
                :*******           **********************************************************************************:
8h13_A_1     217:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316
SecStr          :    EE -----------   EEEEE EE   EEE  TT S  EE  SSS HHHHHHHHHTSS   SEEEEEEEEEB   S EEE          HHHHS:    
ExpBur          :eebeeee-----------eebbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeebeeebeebebeeeeebbbbeeeeeebebeebbe:    

queryA       331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
                :*************************        ************************************ ****************************  :
8h13_A_1     317:ATKFPSVYAWERKKISNCVADYSVLXXXXXXXXFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIXX: 416
SecStr          : S    SSS  EEEE SEE   TT -------- EESSS SGGGGTS BS EEEE  EE SGGGGG STT   HHHHHH    SS  SEEEEEE    --:    
ExpBur          :eeebebbeebeeeebeebbbebeee--------eeeeebeeeebeeebbeebebbbbbbebebeebbbeeeebeebeeebebeeebebbbbeeebeee--:    

queryA       431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
                :    *******************                       *************************   **************************:
8h13_A_1     417:XXXXNYNYKYRYLRHGKLRPFERXXXXXXXXXXXXXXXXXXXXXXXPLNDYGFYTTTGIGYQPYRVVVLSFXXXNAPATVCGPKLSTDLIKNQCVNFNFN: 516
SecStr          :---- TT EEE   SS   SS  ----------------------- EEE STTS S  S   EEEEEEE ---     EE          SS EEEEET:    
ExpBur          :----eeebebeeeeeeebeeeee-----------------------eeeebebeeeeeeeebbebbbbbeb---eeeeebbbeeeeeebeeeebbebbbe:    

queryA       531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
                :****************************************************************************************************:
8h13_A_1     517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616
SecStr          :TEEEEEEEE       TT  EEE SSS EEEEE TTT  EEEEE  SEEEEEEEES TTT S  EEEEES  THHHHHHHHTT BSS  SS    S EEE:    
ExpBur          :eeeeebbbeeeeeeeeeeeeebeeeeeeeebbebeeeeeebbbeebbebbbbbbbbbbeeeeebbbbbeebebeebeebeeeeebeeebeebeeeeeebe:    

queryA       631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
                :********************************        ************************************************************:
8h13_A_1     617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716
SecStr          : SSEEEES EE  S B  SEEEETTEEEE   --------    EEEEB   S       TTEEEEEEEEEEEEEEEEEE      EE HHHHHS S HH:    
ExpBur          :beebbbbbbeeeeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeeeeb:    

queryA       731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
                :******************************************************************************                      :
8h13_A_1     717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXX: 816
SecStr          :HHHHHHHSTT HHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEE TTTS  SSSSS   HHHHHHHTT ----------------------:    
ExpBur          :beebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeebeeeebebbebeebbbeeeeeeebbebbbbbeeee----------------------:    

queryA       831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
                :     ***********************************************************************************************:
8h13_A_1     817:XXXXXKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916
SecStr          :----- TT EE    SS HHHHHHHHHHHHHHHHHHTT SSSSS     HHHHHHHHHHHHT  HHHHHHSHHHHHHHHHHHHHHHHHHHHH S S HHH:    
ExpBur          :-----eebeeeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeeeeebeeb:    

queryA       931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
                :************************************** *************************************************************:
8h13_A_1     917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016
SecStr          :HHHHHHHHHHHHHHHHHTT  TTSS S HHHHHTTS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS   STTSSSSSEE:    
ExpBur          :eebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbebbeeeebbbeeeb:    

queryA      1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
                :*********************************************************************************************:
8h13_A_1    1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109
SecStr          :EEEEEEEETTEEEEEEEEEEEEEEEEEEEESEEESSS EEEESSSEEE TTSS EEE SSS   B  BSTTEEE S TTSSTTEEE   B   :    
ExpBur          :bbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbeeeeebbbbbebbbbeeebbeeebeeeeeeeeeeebeeeebeeee:    
Contact         :                                                 b b  b        b

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