Protein Model on 8h13_A_1_C_1
(TEMPLATE: 
8h13
)Protein Model on 8h13_A_1_C_1
(TEMPLATE: 8h13
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [931 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [931 aa] | Spike glycoprotein :SPIKE_SARS | 45E 46I 47F 48R 51T 192G 223P 269N 372T 400G(C) 719D 722M 737Q 739G 740S 741F 744Q 746N 747R 768K 769Q 770M 771Y 772K 779F 836K 837F 838N 839G 841T 843L 844P 845P 846L 851M 855Y 865T 875A 876L 877Q 878I 879P 880F 882M 886Y 896N 899Y 900E 902Q 945V 948L 960N 965R 966L 967D 987Q 994L 1001R 1012S 1013E 1017G 1021R (identity: 98.4 %/85.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h13_A_1 identity=85.0% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** ********* ********** ************** :
8h13_A_1 17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXXXXXXXKDGIYFAATXXXXVVRGWVFGSTXXXXXQSVIIINNSTNVVIXXXXX: 116
SecStr : EEEE S EE SS SS EEE SEE TTEEEEEE ------------- EEEEE ---- EEEEEES ----- EEEEE SS EE -----:
ExpBur :eeeebbebbbbbbeeeebeeeeeebeebbbbbebebebee-------------eeebbbbbe----eebebeeeee-----eeeebeeeeeeeeb-----:
Contact : bbbb b
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
: ****** ********************************************* :
8h13_A_1 117:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLXXXXXX: 216
SecStr :------------------------------ EE ------------- EEEEEEEEEETTEEEEEE EE SS EEEEEEEE ------:
ExpBur :------------------------------eeeeee-------------eebebbbbbeeeeebebbebeeeeeeeeeeeeeeebbeeeeebee------:
Contact : b b
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:******* **********************************************************************************:
8h13_A_1 217:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316
SecStr : EE ----------- EEEEE EE EEE TT S EE SSS HHHHHHHHHTSS SEEEEEEEEEB S EEE HHHHS:
ExpBur :eebeeee-----------eebbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeebeeebeebebeeeeebbbbeeeeeebebeebbe:
Contact : b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:************************* ************************************ **************************** :
8h13_A_1 317:ATKFPSVYAWERKKISNCVADYSVLXXXXXXXXFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIXX: 416
SecStr : S SSS EEEE SEE TT -------- EESSS SGGGGTS BS EEEE EE SGGGGG STT HHHHHH SS SEEEEEE --:
ExpBur :eeebebbeebeeeebeebbbebeee--------eeeeebeeeebeeebbeebebbbbbbebebeebbbeeeebeebeeebebeeebebbbbeeebeee--:
Contact : b b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ******************* ************************* **************************:
8h13_A_1 417:XXXXNYNYKYRYLRHGKLRPFERXXXXXXXXXXXXXXXXXXXXXXXPLNDYGFYTTTGIGYQPYRVVVLSFXXXNAPATVCGPKLSTDLIKNQCVNFNFN: 516
SecStr :---- TT EEE SS SS ----------------------- EEE STTS S S EEEEEEE --- EE SS EEEEET:
ExpBur :----eeebebeeeeeeebeeeee-----------------------eeeebebeeeeeeeebbebbbbbeb---eeeeebbbeeeeeebeeeebbebbbe:
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h13_A_1 517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616
SecStr :TEEEEEEEE TT EEE SSS EEEEE TTT EEEEE SEEEEEEEES TTT S EEEEES THHHHHHHHTT BSS SS S EEE:
ExpBur :eeeeebbbeeeeeeeeeeeeebeeeeeeeebbebeeeeeebbbeebbebbbbbbbbbbeeeeebbbbbeebebeebeebeeeeebeeebeebeeeeeebe:
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h13_A_1 617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716
SecStr : SSEEEES EE S B SEEEETTEEEE -------- EEEEB S TTEEEEEEEEEEEEEEEEEE EE HHHHHS S HH:
ExpBur :beebbbbbbeeeeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeeeeb:
Contact : b b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:****************************************************************************** :
8h13_A_1 717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXX: 816
SecStr :HHHHHHHSTT HHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SSSSS HHHHHHHTT ----------------------:
ExpBur :beebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeebeeeebebbebeebbbeeeeeeebbebbbbbeeee----------------------:
Contact : b bbb b bb bbbbb b
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
: ***********************************************************************************************:
8h13_A_1 817:XXXXXKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916
SecStr :----- TT EE SS HHHHHHHHHHHHHHHHHHTT SSSSS HHHHHHHHHHHHT HHHHHHSHHHHHHHHHHHHHHHHHHHHH S S HHH:
ExpBur :-----eebeeeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeeeeebeeb:
Contact : bbbb b bbbb b b b bbbbbb b b b bb b
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:************************************** *************************************************************:
8h13_A_1 917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016
SecStr :HHHHHHHHHHHHHHHHHTT TTSS S HHHHHTTS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbebbeeeebbbeeeb:
Contact : b b b bbb b b b bb b b
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h13_A_1 1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEESEEESSS EEEESSSEEE TTSS EEE SSS B BSTTEEE S TTSSTTEEE B :
ExpBur :bbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbeeeeebbbbbebbbbeeebbeeebeeeeeeeeeeebeeeebeeee:
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[assembly_id:1]
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