Protein Model on 8h13_A_1_B_1
(TEMPLATE: 
8h13
)Protein Model on 8h13_A_1_B_1
(TEMPLATE: 8h13
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [931 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [931 aa] | Spike glycoprotein :SPIKE_SARS | 301Q 304N 306R 368G 369V 370S 373K 377L 383Y 402T 533T 544R 545F 546Q 548F 549Q 551F 552G 553R 554D 556S 557D 558F 575P 578F 599Q 600D 633A 651P 654A 655G 679M 681L 683A 685S 686S 687I 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 946K 947Q 950S 951N 952F 969V(C) 988T 992Q 995I 999E 1021R 1022V 1023D 1054E 1059T 1060A 1061P 1071F 1072P 1076V 1089R 1103F 1105S 1110V 1111V 1112I (identity: 98.6 %/85.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h13_A_1 identity=85.0% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** ********* ********** ************** :
8h13_A_1 17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXXXXXXXKDGIYFAATXXXXVVRGWVFGSTXXXXXQSVIIINNSTNVVIXXXXX: 116
SecStr : EEEE S EE SS SS EEE SEE TTEEEEEE ------------- EEEEE ---- EEEEEES ----- EEEEE SS EE -----:
ExpBur :eeeebbebbbbbbeeeebeeeeeebeebbbbbebebebee-------------eeebbbbbe----eebebeeeee-----eeeebeeeeeeeeb-----:
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
: ****** ********************************************* :
8h13_A_1 117:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLXXXXXX: 216
SecStr :------------------------------ EE ------------- EEEEEEEEEETTEEEEEE EE SS EEEEEEEE ------:
ExpBur :------------------------------eeeeee-------------eebebbbbbeeeeebebbebeeeeeeeeeeeeeeebbeeeeebee------:
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:******* **********************************************************************************:
8h13_A_1 217:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316
SecStr : EE ----------- EEEEE EE EEE TT S EE SSS HHHHHHHHHTSS SEEEEEEEEEB S EEE HHHHS:
ExpBur :eebeeee-----------eebbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeebeeebeebebeeeeebbbbeeeeeebebeebbe:
Contact : b b b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:************************* ************************************ **************************** :
8h13_A_1 317:ATKFPSVYAWERKKISNCVADYSVLXXXXXXXXFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIXX: 416
SecStr : S SSS EEEE SEE TT -------- EESSS SGGGGTS BS EEEE EE SGGGGG STT HHHHHH SS SEEEEEE --:
ExpBur :eeebebbeebeeeebeebbbebeee--------eeeeebeeeebeeebbeebebbbbbbebebeebbbeeeebeebeeebebeeebebbbbeeebeee--:
Contact : bbb b b b b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ******************* ************************* **************************:
8h13_A_1 417:XXXXNYNYKYRYLRHGKLRPFERXXXXXXXXXXXXXXXXXXXXXXXPLNDYGFYTTTGIGYQPYRVVVLSFXXXNAPATVCGPKLSTDLIKNQCVNFNFN: 516
SecStr :---- TT EEE SS SS ----------------------- EEE STTS S S EEEEEEE --- EE SS EEEEET:
ExpBur :----eeebebeeeeeeebeeeee-----------------------eeeebebeeeeeeeebbebbbbbeb---eeeeebbbeeeeeebeeeebbebbbe:
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h13_A_1 517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616
SecStr :TEEEEEEEE TT EEE SSS EEEEE TTT EEEEE SEEEEEEEES TTT S EEEEES THHHHHHHHTT BSS SS S EEE:
ExpBur :eeeeebbbeeeeeeeeeeeeebeeeeeeeebbebeeeeeebbbeebbebbbbbbbbbbeeeeebbbbbeebebeebeebeeeeebeeebeebeeeeeebe:
Contact : b bbb bb bbbb bbb b b bb
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h13_A_1 617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716
SecStr : SSEEEES EE S B SEEEETTEEEE -------- EEEEB S TTEEEEEEEEEEEEEEEEEE EE HHHHHS S HH:
ExpBur :beebbbbbbeeeeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeeeeb:
Contact : b b bb b b b bbb bbb bbb b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:****************************************************************************** :
8h13_A_1 717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXX: 816
SecStr :HHHHHHHSTT HHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SSSSS HHHHHHHTT ----------------------:
ExpBur :beebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeebeeeebebbebeebbbeeeeeeebbebbbbbeeee----------------------:
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
: ***********************************************************************************************:
8h13_A_1 817:XXXXXKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916
SecStr :----- TT EE SS HHHHHHHHHHHHHHHHHHTT SSSSS HHHHHHHHHHHHT HHHHHHSHHHHHHHHHHHHHHHHHHHHH S S HHH:
ExpBur :-----eebeeeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeeeeebeeb:
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:************************************** *************************************************************:
8h13_A_1 917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016
SecStr :HHHHHHHHHHHHHHHHHTT TTSS S HHHHHTTS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbebbeeeebbbeeeb:
Contact : b b bb bbb b b b b b bbb
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h13_A_1 1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEESEEESSS EEEESSSEEE TTSS EEE SSS B BSTTEEE S TTSSTTEEE B :
ExpBur :bbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbeeeeebbbbbebbbbeeebbeeebeeeeeeeeeeebeeeebeeee:
Contact : b bbb bb b b b b bbb
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