Protein Model on 8h12_A_1_B_1
(TEMPLATE: 
8h12
)Protein Model on 8h12_A_1_B_1
(TEMPLATE: 8h12
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1007 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1007 aa] | Spike glycoprotein :SPIKE_SARS | 301Q 368G 369V 370S 372T 373K 377L 383Y 390K 392D 395R 402T 403G 404V 407D 408Y 413P 440Y 442Y 449R 450P 451F 452E 453R 455I 456S 458V 479N 486T 489I 490G 502E 503L 504L 505N 531G 533T 534G 535T 546Q 549Q 553R 555V 556S 557D 558F 575P 576C 577S 578F 599Q 600D 633A 651P 654A 655G 681L 683A 684D 685S 686S 687I 688A 689Y 691N 693T 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 967D 969V(C) 977R 984Q 988T 991T 992Q 995I 999E 1021R 1022V 1023D 1027K 1028G 1054E 1056N 1059T 1061P 1071F 1072P 1089R 1103F 1105S 1110V 1111V (identity: 99.0 %/91.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h12_A_1 identity=91.9% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** *****************************************************:
8h12_A_1 17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 116
SecStr : EEEE S EE SS S EEEEEEEE TTEEEEEE ------- EE SS EEEEEEESS EEEEEEESSSSSSS EEEEEE SS EEEEEE :
ExpBur :eebebbebbbbbbeeeebeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeeeebbebeeeeeeebbebbbb:
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:** ************ ***************************************************:
8h12_A_1 117:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 216
SecStr : ---------------------- S B B ------------- EEEEEEEEEETTEEEEEEEEEE S SS EEEEEEEE S E:
ExpBur :ee----------------------eeeeeeeeeeee-------------eebebbbbbeeeeebbbbebeeeeeeeeebeeeebebeeeeebebebebee:
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:****** *********************************************************************************:
8h12_A_1 217:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316
SecStr :EEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS SEEEE S EEEE S B HHHHTS:
ExpBur :bebeee-------------ebbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeeeebeebeeebeeebbeeeeebbbbeebeeebebeebbe:
Contact : b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:********************************************************************* ******************************:
8h12_A_1 317:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 416
SecStr : S GGG EEEEE SBB SSSTTT SEEEEESS GGGSSS B S EEEEEEEE GGGGGGSSSS SSHHHHT TT EEEEEEE SSS :
ExpBur :eeebebbeebeeeebeebbbebeebeeebeeeeeebeebeeeebeebbbbbbebbbbbbbbebbebbbeeeeeebbbebbbbbeebebbbbbbebeeebb:
Contact : bbb bb b b b b b bbb bb b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
:****************************************************************************************************:
8h12_A_1 417:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 516
SecStr : SS B EE SS TT B TTSS TTSSS B S EE B SSS GGGS EEEEEEE SS BB SS BEEEES:
ExpBur :eeeebeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbeeeeeeeebbbeeeeeeeeeeebbebbbb:
Contact : b b bbbbb bb b b b bb bbbb
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h12_A_1 517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616
SecStr :S B BEEEE TT B TTS EEE TTT EEEEE SS SEEEEEES TTT S EEEEET TTSHHHHHTGGGS TTTGGGSSSS EEE:
ExpBur :beeeebbbeeeeeebeeebbbbeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbeeeeeebbbbbeeeebeebeeebbbeebeeebeebbeeeeebe:
Contact :b bbb b b b bbbb bbbb bb
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ***********************************************************:
8h12_A_1 617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716
SecStr :ETTEEEES EE SS B SEEEETTEEEEEE --------- EEEEEEB TT EEEEEEEEEEEEEEEEE EEEE HHHHHSTT HH:
ExpBur :beebbbbebeebeeeeeeebebeeebbbbbee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:
Contact : b b bb b bbbbbbb b bbb b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:****************************************************************************** :
8h12_A_1 717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXX: 816
SecStr :HHHHHTTSTTSSHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTSS SSSS SS HHHHHHTT ----------------------:
ExpBur :bbebbeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeebbebbebbbebe----------------------:
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
:****************************************************************************************************:
8h12_A_1 817:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916
SecStr : HHHHHTTTEEEE SS HHHHTTTHHHHHHHHTTT STTSSSS HHHHHHHHHHTTT THHHHHTHHHHHHHHHHHHHHHHHHHHH SSSHHH:
ExpBur :eeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbeebbeebbeebeeeeeebeeb:
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:************************************** *************************************************************:
8h12_A_1 917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016
SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHHHSS TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS TTSSSSSEE:
ExpBur :eebeeebeeebeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbbbbeeeebbbeeeb:
Contact : b b b bbb b b b b b bb b b bbb bb
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h12_A_1 1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEE BS EESSSEEEEESSSEEEE SSSEEEE TTS B BSTTEEEEEETTSSTT EE B :
ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeeeeeeeebeeeebeeee:
Contact : b b b b bb b b b bb
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[assembly_id:1]
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