Protein Model on 8h11_B_1_S_1 (TEMPLATE: 8h11 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) B 1 (A) polymer(polypeptide(L)) [979 aa] Spike glycoprotein :SPIKE_SARS
2 b S 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 119N 122N 124V 164I (identity: 100.0 %/89.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8h11_B_1 identity=89.4%
queryA        31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
                :****************************************       *****************************************************:
8h11_B_1      21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr          : EEEETT  EE  SS    S EEEEEEEE  TTEEEEEE -------   EE SS EEEEEEESS  EEEEEE SSSSTTS EEEEEE SS EEEEEEEE:    
ExpBur          :eeeebbebbbbbbeeeebeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeebbbbebeeeeeeebbebbbb:    
Contact         :                                                                                        b  b b      

queryA       131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
                :**                      ************             ************************    ***********************:
8h11_B_1     121:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIXXXXDLPSGFNTLKPIFKLPLGINITN: 220
SecStr          :  ---------------------- EEEEEEEEEE ------------- EEEEEEEEEETTEEEEEEEEE  ----       EEEEEEEE       E:    
ExpBur          :ee----------------------eeeeeeeeeeee-------------ebbebbbbbeeeeebbbbebeeee----ebeeeebbbeeeeebebebebee:    
Contact         :                                 b                                                                  

queryA       231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
                :******             *********************************************************************************:
8h11_B_1     221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr          :EEEEE -------------  EEEEE EEEEEEEEE SSSSEEEEEETTS HHHHHHHHHT S   SEEEEEEEEEB    EEEE      B  SHHHHS:    
ExpBur          :bebeee-------------ebbbbbbbeebebbbebeeeeebeebbbbebebbbbbbbeeeebebeebeeebeebebeeeeebbbbeeeeeebebeebbe:    

queryA       331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
                :*************************************** *********************************************************** :
8h11_B_1     321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDX: 420
SecStr          : S    SSS EEEEE SEE   HHHHT S  SEEEEESS GGGGGT  BS EEEEEEEE STTGGGSSTT  SHHHHHT    TT  EEEEEEE TT  -:    
ExpBur          :eeebbbbeebeeeebeebebebbebeeeeebeeeebeebeeeebbeebbbbbebbbbbbbbebeebbbeeeeeebbbebbbbbeebebbbbbbebeeee-:    

queryA       431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
                :       **************************          **********      *****************************************:
8h11_B_1     421:XXXXXXXYKYRYLRHGKLRPFERDISNVPFSPDXXXXXXXXXXCYWPLNDYGFXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr          :------- EEE   SS   TT            ----------    EEE   ------    EEEEEEEE  SSSS  EE S        SSEEEEEET:    
ExpBur          :-------eebbeeeeeebeeeeebeeeeebeee----------eeebbeebee------eeeebbbbbbbbeeeeeebbbbbeeeeeeeeeeebbebbbb:    

queryA       531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
                :****************************************************************************************************:
8h11_B_1     521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr          :TEEEEEEEEE      TT  EEE TTS EEEEE TTT  EEEEE   EEEEEEEES TTT S  EEEEET  HHHHHHHHHTT BSS  SS   TT EEE:    
ExpBur          :eeeeebebeeeeeebeeeebebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeeeeeebbbbeebebeebbebbeeeebebebeeeebeeeeee:    

queryA       631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
                :********************************        ************************************************************:
8h11_B_1     621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr          : SSEEEES EE S     SEEEETTEEEEEE --------  EEEEEE   S        SSEEEEEEEEEEEEEEEEEE    EEEE HHHHHTTT HH:    
ExpBur          :bebbbbbebeeeeeeeeeebebeeebbbbbee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:    

queryA       731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
                :********************************************************************************                    :
8h11_B_1     721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXX: 820
SecStr          :HHHHHGGG SSHHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEE GGGS  TTSSSSS HHHHHHHHH   --------------------:    
ExpBur          :beebbeeeeeebeebeeebeebbebbbebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeebbebbbbbbeebee--------------------:    

queryA       831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
                :   *************************************************************************************************:
8h11_B_1     821:XXXAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr          :---   TT EEEE  SS HHHHHHHHHHHHHHHHHHTT SSSSS     HHHHHHHHHHHTT  HHHHHHSHHHHHHHHHHHHHHHHHHHHS  STTHHH:    
ExpBur          :---eeeebbeeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeeeeebeeb:    

queryA       931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
                :************************************ ***************************************************************:
8h11_B_1     921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr          :HHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS   STTSSSSSEE:    
ExpBur          :eebbeebeebeeebeeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb:    

queryA      1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
                :*********************************************************************************************:
8h11_B_1    1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr          :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEE SS EEEE SSS   B  BSTTEEE S TTSSTT EE   B   :    
ExpBur          :bbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeeeeeeeeeebeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123