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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1026 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | E 1 (E) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 444R 445H 449R 452E (identity: 100.0 %/93.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h10_A_1 identity=93.5% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h10_A_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEEE S EE SEEEEEEEEE TTEEEEEE ------- EE SS EEEEEEESS EEEEEEESSSSTTS EEEEEE SS EEEEEE : ExpBur :eebebbebbbbbeeeeeeeeeeeebeeebbebeeebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeebebbbbbeeeeeebbebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :******** **************** ***************************************************: 8h10_A_1 121:ELCDNPFFXXXXXXXXXXXXMIFDNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220 SecStr : B SS ------------ BS S EEEEE ------------- EEEEEEEEEETTEEEEEEEEE S SS EEEEEEEE E: ExpBur :eeeeebee------------ebeeeeeeeebeeeee-------------ebbebbbbbeeeeebbbbebeeebeeeeebeeeeeebeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h10_A_1 221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ----------- EEEEEE EEEEEEEEE TTS EEEEEETTT HHHHHHHHHTSS SEEEE S EEEE B HHHHHS: ExpBur :bbbbbee-----------eebbbbbebeebbbbbebbeeeebeebbbbbbebbbbbbbeeeeeebeebeeebeeebeeeeeebbbbeeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*************************************** ************************************************************: 8h10_A_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420 SecStr : S BSTT EEEEE SEE GGGTT SEEEEESS GGGSSS BSEEEEEEEEE GGGGGGSSTT SHHHHHT SS EEEEEEE HHHH : ExpBur :eeebbbbbebeeeebeebbbeeeebeeeeeeeeeeeeebeeeebeebbbbebebbbbbbbbebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h10_A_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr : SS BTT EEE SS TT B TTSS TTSSS B SEEE B SSS GGGS EEEEEEEEE SSS EE SS BEEEET: ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbebbeeeeeebebbbeeeeeebeeeebbebbbb: Contact : bb b b queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h10_A_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620 SecStr :TEE BEEEE TT EEE TTS EEEEE TTT EEEEE S S EEEEES TTT EEEEET GGGHHHHHTGGGS HHHHTTTSSS EEE: ExpBur :ebeeebbbeeeeeebeeeebbbeeeeeebebbbbeeeeebbebeebeeeebbbbbbbeeeeeebbbbbbebebeebeeebbbeebeeebeebbeeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h10_A_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SSEEEES EE SS SEEEETTEEEEEE -------- EEEEEE TTEEEEEEEEEEEEEEEEEE EEEE HHHHHSTT HH: ExpBur :beebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :********************************************************************************* *: 8h10_A_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXXXXXXXXXXXXXXD: 820 SecStr :HHHHHHTSTTSTHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE GGGS SSSS SS HHHHHHTTSS ------------------ : ExpBur :beebbeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebebebbebeebbeeeeeeeeebebbebbbeebeee------------------e: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h10_A_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr : HHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHT SSSSSSS HHHHHHHHHHTTT HHHHHHTHHHHHHHHHHHHHHHHHHHHS TTHHH: ExpBur :eeeebeeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************ ***************************************************************: 8h10_A_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHSSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebbeebeeebeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQP:1125 :***********************************************************************************************: 8h10_A_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQP:1115 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SSSEEEE SSS EE BSTTEEE S TTSSTT EE B S : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbebbeeeeebbeeebeeeeeeeeeeeeeeeebeeeeee: |