Protein Model on 8h0z_C_1_U_1 (TEMPLATE: 8h0z )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS) C 1 (C) polymer(polypeptide(L)) [1035 aa] Spike glycoprotein :SPIKE_SARS
2 b U 1 (B) non-polymer(EIC) LINOLEIC ACID 323C 324P 328V 345I 350A 352Y 361F 364F 379F 499L 501F (identity: 100.0 %/94.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8h0z_C_1 identity=94.5%
queryA        31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
                :****************************************       *****************************************************:
8h0z_C_1      21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr          : EEE  S  EE   SS   SEEEEEEEEE  TT EEEEE -------   EE SS EEEEEEESS  EEEEEEES SSTTS EEEEEE SS EEEEEEEE:    
ExpBur          :eebebbebbbbeeeeeeebeeeeebeeebbebeeebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeebebbbbbeeeebbebebbbb:    

queryA       131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
                :********             *****************           ***************************************************:
8h0z_C_1     121:ELCDNPFFXXXXXXXXXXXXXIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220
SecStr          :   SS B -------------  S EEEEEEEEE    ----------- EEEEEEEEEETTEEEEEEEEEE   SSS      EEEEEEEE       E:    
ExpBur          :eeeeebee-------------eeeeeeeeeeeeeeeee-----------eebebbbbbeeeeebbbbebeeebeeeeebbeeebebeeeeebebebebee:    

queryA       231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
                :*******           **********************************************************************************:
8h0z_C_1     221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr          :EEEEE  -----------  EEEEEE EEEEEEEEE TTS B   EESSS HHHHHHHHHT S   SEEEE          EEEE     SB  HHHHHS:    
ExpBur          :bbbbbee-----------ebbbbbbebeebebbbebeeebebeebbbbbbebbbbbebeeeeeebeebeeebeeebeeeeeebbbbeeeeeebebeebbe:    
Contact         :                                                                                            bb   b  

queryA       331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
                :*************************************** ************************************************************:
8h0z_C_1     321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420
SecStr          : S    STT EEEE  SBB  GGGGGSS   SEEEEESS SGGGGS EESS EEEEEEE GGGGGGSSTT  SHHHHHT    TT  EEEEEEE  TTT :    
ExpBur          :eeebbbbbebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb:    
Contact         :              b    b b        b  b              b                                                   

queryA       431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
                :****************************************************************************************************:
8h0z_C_1     421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr          : SS B   EEE   SS   TT        B SS     SSSSS B SEEE  B SSS GGGS EEEEEEE   SSS   EE          SS EEEEET:    
ExpBur          :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbbbeeeeeebebbbeeeeeeeeeeebbebbbb:    
Contact         :                                                                    b b                             

queryA       531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
                :****************************************************************************************************:
8h0z_C_1     521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr          :TEEEEEEEEE      TT  EE  TT    EEE TTT  EEEEE S  S EEEEES SSS S  EEEEET  STTSHHHHT TTS HHHHSTTSSSSEEE:    
ExpBur          :beeeebbbeeeeeebeeeebbbeeeeeebebbbbeeeeebbebeebeeebbbbbbbbeeeeeebbbbbeebebeebeeebbbeebeeebeebbeeeeeee:    

queryA       631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
                :********************************        ************************************************************:
8h0z_C_1     621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr          : SSEEEES EE SS    SEEEETTEEEEEE --------  EEEEEE            TTEEEEE  EEEEEEEEEEE    EEEE HHHHTSTT HH:    
ExpBur          :beebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:    

queryA       731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
                :********************************************************************************    **********    **:
8h0z_C_1     721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXFMKQYGECLGXXXXRD: 820
SecStr          :HHHHHTTSTTSSHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEE GGGS  TTSSSSS HHHHHHHHHS  ----    TTSS  ----  :    
ExpBur          :bbebbeeeeeebeebeeebeebbebbeebbeebbbebeeeeeeeeebebeebebeebbbeeeeeeebbebbbbbbeebee----eebeeeeeee----ee:    

queryA       831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
                :****************************************************************************************************:
8h0z_C_1     821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr          :HHHHHHHTTEEEE  SS HHHHHHHHHHHHHHHHHT STTTTSS     HHHHHHHHHHHTT  HHHHHHTHHHHHHHHHHHHHHHHHHHSS SSTT HH:    
ExpBur          :ebbebbeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb:    

queryA       931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
                :************************************ ***************************************************************:
8h0z_C_1     921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr          :HHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS   STTSSSSSEE:    
ExpBur          :eebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbebbeeeebbbeeeb:    

queryA      1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
                :*********************************************************************************************:
8h0z_C_1    1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr          :EEEEEEEETTEEEEEEEEEEE  EEEEEEES EESSS EEEESSSEEEE SS EEEE SSS   EE BSTTEEE S SSSSTT EE   B   :    
ExpBur          :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbebbbeeeebbeeebeeeeeeeeeeeeeeeebeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123