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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1035 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | TA 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 691N (identity: 100.0 %/94.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h0z_C_1 identity=94.5% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h0z_C_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEE S EE SS SEEEEEEEEE TT EEEEE ------- EE SS EEEEEEESS EEEEEEES SSTTS EEEEEE SS EEEEEEEE: ExpBur :eebebbebbbbeeeeeeebeeeeebeeebbebeeebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeebebbbbbeeeebbebebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :******** ***************** ***************************************************: 8h0z_C_1 121:ELCDNPFFXXXXXXXXXXXXXIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220 SecStr : SS B ------------- S EEEEEEEEE ----------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEEEEE E: ExpBur :eeeeebee-------------eeeeeeeeeeeeeeeee-----------eebebbbbbeeeeebbbbebeeebeeeeebbeeebebeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h0z_C_1 221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ----------- EEEEEE EEEEEEEEE TTS B EESSS HHHHHHHHHT S SEEEE EEEE SB HHHHHS: ExpBur :bbbbbee-----------ebbbbbbebeebebbbebeeebebeebbbbbbebbbbbebeeeeeebeebeeebeeebeeeeeebbbbeeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*************************************** ************************************************************: 8h0z_C_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420 SecStr : S STT EEEE SBB GGGGGSS SEEEEESS SGGGGS EESS EEEEEEE GGGGGGSSTT SHHHHHT TT EEEEEEE TTT : ExpBur :eeebbbbbebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h0z_C_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr : SS B EEE SS TT B SS SSSSS B SEEE B SSS GGGS EEEEEEE SSS EE SS EEEEET: ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbbbeeeeeebebbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h0z_C_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620 SecStr :TEEEEEEEEE TT EE TT EEE TTT EEEEE S S EEEEES SSS S EEEEET STTSHHHHT TTS HHHHSTTSSSSEEE: ExpBur :beeeebbbeeeeeebeeeebbbeeeeeebebbbbeeeeebbebeebeeebbbbbbbbeeeeeebbbbbeebebeebeeebbbeebeeebeebbeeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h0z_C_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SSEEEES EE SS SEEEETTEEEEEE -------- EEEEEE TTEEEEE EEEEEEEEEEE EEEE HHHHTSTT HH: ExpBur :beebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: Contact : b queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :******************************************************************************** ********** **: 8h0z_C_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXFMKQYGECLGXXXXRD: 820 SecStr :HHHHHTTSTTSSHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE GGGS TTSSSSS HHHHHHHHHS ---- TTSS ---- : ExpBur :bbebbeeeeeebeebeeebeebbebbeebbeebbbebeeeeeeeeebebeebebeebbbeeeeeeebbebbbbbbeebee----eebeeeeeee----ee: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h0z_C_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHT STTTTSS HHHHHHHHHHHTT HHHHHHTHHHHHHHHHHHHHHHHHHHSS SSTT HH: ExpBur :ebbebbeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************ ***************************************************************: 8h0z_C_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbebbeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h0z_C_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113 SecStr :EEEEEEEETTEEEEEEEEEEE EEEEEEES EESSS EEEESSSEEEE SS EEEE SSS EE BSTTEEE S SSSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbebbbeeeebbeeebeeeeeeeeeeeeeeeebeeee: |