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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (B) | polymer(polypeptide(L)) [1045 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | K 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 157F 158N (identity: 100.0 %/95.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h0z_A_1 identity=95.4% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h0z_A_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEE SS EE S S EEEEEEEE TT EEEEE ------- EE SSEEEEEEEESS EEEEEEESSSSTTS EEEEEE SS EEEEEEE : ExpBur :eebebbebbbbeeeeeeebebeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebbbbbbbbebeeeeebbbbbeeeebebbebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :******** ******************* ***************************************************: 8h0z_A_1 121:ELCDNPFFXXXXXXXXXXXTMIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220 SecStr : SS ----------- SS S EEEEEEEE ----------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEEEEEE E: ExpBur :ebeeebee-----------eebeeeeeeeeeeeebeee-----------bebebbbbbeeeeebbbbebeeebeeeeebeeeebbbeeeeebebebebee: Contact : bb queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h0z_A_1 221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ----------- EEEEEE EEEEEEEEE SSS EEEEEESSSSHHHHHHHHHTSS SEEEE EEEE SB HHHHHS: ExpBur :bbbbbee-----------ebbbbbbebeebbbbbebeeeeebeebbbbebebbbbbbbeeeebebeebeeebeeebeeeeeebbbbeeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*************************************** ************************************************************: 8h0z_A_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420 SecStr : S BSTT EEEEE SEE GGGGTTT SEEEEESS TGGGGG BS EEEEEEEEEGGGGGGSSTT SHHHHHT SS EEEEEEE TTTS : ExpBur :eeebbbbbebeeeebeebbeeeeebeeeeeeeeeeeeeeeeeebeeebbbebebbbbbbbbebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h0z_A_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr :BSS B EEE SS TT B SS SSSSS B SEEE BBSSS GGGSEEEEEEEE SSS EE S SS EEEEET: ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbebbeeeeeebebbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h0z_A_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620 SecStr :TEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE S SEEEEEES TTT S EEEEET GGG HHHHTGGGS HHHHTTTS S EEE: ExpBur :eeeeebbbeeeeeebeeeebbbeeeeeebebbbbeeeeebbebeebeeeebbbbbbbbeebeebbbbbeeeebeebeeebebeebeebbeebbeeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h0z_A_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SSEEEES EE S SEEEETTEEEEEE -------- EEEEEE S TTEEEEE EEEEEEEEEEE EEEE HHHHHSTT HH: ExpBur :beebbbbebeeeeeeeeeebebeeebbbbbee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :****************************************************************************************************: 8h0z_A_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 820 SecStr :HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTSS SSSS SS HHHHHHHHHS S HHHHHS SS : ExpBur :bbeebeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeeebebbbbbbeebeeeeeeeeeeeeebeeeeeeee: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h0z_A_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHTTTTTTTSS HHHHHHHHHHHHT HHHHHHTHHHHHHHHHHHHHHHHHHTTT SGGGHHH: ExpBur :eebebeeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbeebbeebeeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************ ***************************************************************: 8h0z_A_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :bebbeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbeebeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h0z_A_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113 SecStr :EEEEEEEETTEEEEEEEEEEE EEEEEEES EESSSSEEEESSSEEEE SSSEEEE SSS B BSTTEEE S TTSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbebbbeeeebbeeebeeeeebeeeeeeeeeebeeee: |