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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (A) | polymer(polypeptide(L)) [1044 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | IA 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 699N 908Q 1053Q (identity: 100.0 %/95.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h0y_B_1 identity=95.3% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :***************************************** *****************************************************: 8h0y_B_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEEETT EE S S EEEEEEEE TTEEEEEEE ------ EE S EEEEEEESS EEEEEEESSSSTTSEEEEEE TT EEEEEEE: ExpBur :eeeebbebbbbeeeeeebbeeeeeeeebbbebebebebeee------eeebebeebbbbbbbbeeebbebbbbbbeeeeebebbbbbeeeeebbbebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :********* ****************** ***************************************************: 8h0y_B_1 121:ELCDNPFFAXXXXXXXXXXXMIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220 SecStr :EE SS B ----------- EEEEEEEEEEEE ----------- EEEEEEEEEETTEEEEEEEEE SS EEEEEEEE E: ExpBur :ebeeebeeb-----------ebeeeeeeeeeeeeeeee-----------eebbbbbbbeeeeebebbebeeebeeeeebeeeeebbeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :******* **********************************************************************************: 8h0y_B_1 221:FRAILTAXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ----------- EEEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHTT SS SEEEE EEEE B HHHHTS: ExpBur :bbbbbee-----------ebbbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeebebeebeeebeeebeeeeeebbbbeeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*************************************** ************************************************************: 8h0y_B_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420 SecStr : S STT EEEEE SEE GGGGTTT SEEEEESS GGGGGG EESSEEEEEEEEESTTGGG SSS SHHHHHT TT EEEEEEE HHHH : ExpBur :eeebbbbbebeeeebeebbbeeeebeeeeeeeeeebbebeeeebeebbbbebebbbbbbbeebbebbbbeeeeebbbebbebbeebebbbbbbebeeebb: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h0y_B_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr :BSS B EEE SS TT B SSSS TTSTT B SEEE BBTTS GGGSEEEEEEEE BSSS EE S SSEEEEEET: ExpBur :eeebbeebeebeeeeeebeeeeeeeeeeebbeeeeebeeeeeebeebbeebebeeeeeebebbbbbbbebbebeeeebebbbeeeeeebeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h0y_B_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620 SecStr :TEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE S S EEEEE TTT S EEEESS SSSSHHHHTGGGS HHHHTTTSSSS EE: ExpBur :bbeeebbbeeeeeeeeeeebbbeeeeeebbbbbbeeeeebbebeebeeeebbbbbbbbeeeeebbbbbeebeeeebeeebbbeebeeebeebbeeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h0y_B_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr : SSSEEES EE S SEEEETTEEEEEE -------- EEEEEE SSEEEEEEEEEEEEEEEEEE EEEE HHHHHTTT HH: ExpBur :beebbbbbbeeeeeeeebebebeeebbbbbee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeebbbbbebbebebeebbbeebee: Contact : b queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :********************************************************************************* *****************: 8h0y_B_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXGFMKQYGECLGDINARD: 820 SecStr :HHHHTTTT HHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE GGGS TTSSSSS HHHHHHHHHS -- HHHHHSSTTS : ExpBur :beebbeeeeeebeebeeebeebbebbbebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeebbebbbbbbeebeee--eeeeeeeebeeeeeeee: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h0y_B_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :HHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHTTT HHHHHHSHHHHHHHHHHHHHHHHHHHHH SSSTTH: ExpBur :eebebeeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebeeebeeeeeebeeb: Contact : b queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************ ***************************************************************: 8h0y_B_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHGGG SSSS S HHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :bebbeebeebbeebeeebeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbbbbeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h0y_B_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SSSEEEE SSS B BTTTEEE S TTS TT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbbeeebbeeeebbbbeeeeebbbbbebbeeeeebbeeebeeeeebeeeeeeeeeebeeee: Contact : b |