Protein Model on 8h0y_A_1_B_1
(TEMPLATE: 
8h0y
)Protein Model on 8h0y_A_1_B_1
(TEMPLATE: 8h0y
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (B) | polymer(polypeptide(L)) [1019 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | B 1 (A) | polymer(polypeptide(L)) [1044 aa] | Spike glycoprotein :SPIKE_SARS | 45E 46I 47F 110K 112Q 191D 192G 193F 217K 221K 223P 224L 225G 227N 269N 352Y 353S 356Y 357N 360F 361F 362S 364F 371A 372T 375N 414D 489I 722M 727D 733N 736L 737Q 738Y 740S 741F 744Q 747R 768K 769Q 770M 771Y 772K 779F 815F 817K 818Q 819Y 823L 829R 836K 837F 845P 846L 848T 851M 854A 855Y 865T 872A 876L 877Q 878I 879P 880F 882M 886Y 895Q 896N 899Y 900E 902Q 945V 948L 949S 957S 958V 960N 961D 963L 964S 965R 966L 967D(C) 976D 984Q 987Q 991T 994L 1001R 1012S 1013E 1021R (identity: 98.9 %/93.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h0y_A_1 identity=93.0% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:***************************************** **************** ***********************************:
8h0y_A_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTXXXXXXNPVIPFKDGIYFAATEXXNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr : EEEE S EE SS S EEEEEEEE TTEEEEEEE ------ EE S EEEEEE -- EEEEEEESSSSTTS EEEEEE SS EEEEEEEE:
ExpBur :eeeebbebbbbbeeeeebbeeeeebeeebbbbebebebeee------eeebebeebbbbbbbb--eebebbbbbbebeeeeebbbbbeeeeebebebbbb:
Contact : bbb b b
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:********* ****************** ***************************************************:
8h0y_A_1 121:ELCDNPFFAXXXXXXXXXXXMIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220
SecStr :EE SS ----------- EEEEEEEEEEEE ----------- EEEEEEEEEETTEEEEEEEEEE SS EEEEEEEEE E:
ExpBur :ebeeebeeb-----------ebeeeeeeeeeeeeeeee-----------eebebbbbbeeeeebebbebeeebeeeebbeeeeebbeeeeebebebebee:
Contact : bbb b b bbb b
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:******* *********************************************************************************:
8h0y_A_1 221:FRAILTAXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ------------ EEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT S SEEEEE B EEEE B HHHHTT:
ExpBur :bebbbee------------ebbbbbebeebebbbebeeebebeebbbbeeebbbebbbeeeebebeebeeebeebeeeeeeebbbbeebeeebebeebbe:
Contact : b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*************************************** ************************************************************:
8h0y_A_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 420
SecStr : S BSTT EEEEE SEE GGGGTT SEEEEESS GGGTTT EESSEEEEEEEEEGGGGGGSSSS SHHHHHT TT EEEEEEE HHHH :
ExpBur :eeebbbbbebeeeebeebbbeeeebeeeeeeeeeebeeeeeeebeebbbbebebbbbbbbeebbebbbeeeeeebbbebbebbeebebbbbbbebeeebb:
Contact : bb bb bbb b bb b b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
:****************************************************************************************************:
8h0y_A_1 421:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr : TT TT EEE SS TT B SSSS TTSTT B SEEE TTS GGGSEEEEEEEE BSSS EE S SSEEEEEET:
ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbebbebeeeebebbbeeeeeeeeeeebbebbbb:
Contact : b
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:************************************************************************* ************:
8h0y_A_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCXXXXXXXXXXXXXXXWRIYSTGNNVFQ: 620
SecStr :TEEEEEEEEE TT EEE TT EEEEE SSS EEEEE SB S EEEEE TTT S EEEESS --------------- S S EEE:
ExpBur :bbeeebbbeeeeeebeeeebbeeeeeeebebbbbbeeeebbebeebeebbbbbbbbbbeeeeeebbbbeeeee---------------eebeeeeeeeee:
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h0y_A_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr : SS EEES EE S B SEEEETTEEEEEE -------- EEEEEEB SSEEEEEEEEEEEEEEEEEE EEEE HHHHHTSS HH:
ExpBur :beebbbbebeeeeeeeeeebebeeebbbbbee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:
Contact : b b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** ********* **:
8h0y_A_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXFMKQYGECLXXXXXRD: 820
SecStr :HHHHTTTT HHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTSS SSSSSSS HHHHHHHHHS ---- TTT ----- :
ExpBur :beeebeeeeeebeebeeebeebbebbbebbeebbeebeeeeeeeeebebeebebeebbbeeebeeebbebbbbbbeebee----eebeeeebe-----ee:
Contact : b bbb bb b b bbbbb b b bbb b b
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
:****************************************************************************************************:
8h0y_A_1 821:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr :HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTTTTSSS HHHHHHHHHHTTT SHHHHTTHHHHHHHHHHHHHHHHHHHHS S SHHH:
ExpBur :eebebeeebbeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbbebbeebeeebeeeeeebeeb:
Contact : bb bb b b bb b b bbbbb b b bb bb b
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:************************************ ***************************************************************:
8h0y_A_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebbeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbeebeeeebbbeeeb:
Contact : b bb bb bb bbbbb b b b b b b bb b
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h0y_A_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS B BTTTEEE S TTSSTT EE B :
ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbbeeebbeeeebbbbeeeeebebbbebbbeeeebbeeebeeeeebeeeeeeeeeebeeee:
|
[assembly_id:1]
[help]