CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1109 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | |
2 | b | F 1 (N) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 778Y(D) 783N 785S 786Q (identity: 75.0 %/87.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8ajl_A_1 identity=87.6% |
queryA 19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112 :* * ** ** ** ******* ***** * **** **** **** * * ** *** ** ********** *** **** * **: 8ajl_A_1 2:CGTLSNKSPPNMTQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNSDSDRIVRFDNPIIPFGDGVYFAATEKSNVIRGWIFGSTLDNTSQ: 101 SecStr : SB EEEESS EE SS S EEEEEEEE TTEEEEEEEEE SS TTSBEE EE S EEEEEEESS EEEEEEESS STTSE: ExpBur :bbeeeeebeeeeeebebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeeeeeeeebbbbbeebebeebbbbbbbbebbbbbbbbbbbebeeeee: queryA 113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212 :* ** **** *** *** *** * **** * * * * ** *** ** * * ****** ************* **** ** ** **** * ****: 8ajl_A_1 102:SAIIMNNSTHIVIRVCNFQLCDDPMFAVSRPTGQHYKTWIYTNARNCTYEYVSKSFQLDVSEKPGNFKHLREFVFKNVDGFLHVYSGYEPIDVARGLPSG: 201 SecStr :EEEEEE SSSEEEEEEEEEEEEEEEEEEESSS S SEEEEEEEE EEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS : ExpBur :bbbbbbbbeeebbebbebebbebbbbbbbeeeebeeeebbeeeeeeeeeeeebeeeeeebebeeeebeebbbbbbbeeeeebbbbbbeeebeeeebbbee: queryA 213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312 :* ***************** * * *** ** ***************** ************** ** **** **** *********** * : 8ajl_A_1 202:FSVLKPIFKLPLGINITNFRVIMTMFSPTTSNWGAEAAAYFVGYLKPTTFMLKFDENGTITDAVDCSQDPLSELKCTVKSFNVEKGIYQTSNFRVSPTKE: 301 SecStr : EEEEEEEE S EEEEEEEEEESSSSS B SEEEEEEE EEEEEEEEE TT EEEEEETTS HHHHHHHHTTSS SEEEE S SE: ExpBur :ebebeeebebebebebeebbbbbbbbbeeeeebbbbebbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee: queryA 313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412 :******************** ********* ** ************ ********** ********* *******************************: 8ajl_A_1 302:VVRFPNITNLCPFGEVFNATTFPSVYAWERTRISDCVADYSVLYNSTSFSTFKCYGVSPTKLNDLCFSSVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 401 SecStr :EEE B THHHHHT SS BGGG EEEEE SEE GGGGTTT SEEEEESS TTGGGG EESEEEEEEEEEETTGGGGSSTT SHHHHHT : ExpBur :bbbbeeeeeebebeebbeeeebbbbebbeeeebeebbbbbeebeeeeebeeeebeebeeeebebbbbbbbebbbbbbbeebbebbbeeeebebbbebbeb: queryA 413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512 :**** *** **** * ********** ** ****** ************* ******** *** *** *** * *************************: 8ajl_A_1 402:PDDFTGCVIAWNTANLDATSTGNYNYYYRSLRHGKLKPFERDISNVPFSPEGKPCTPPAFNCYRPLNTYGFNPTVGIGYQPYRVVVLSFELLNAPATVCG: 501 SecStr : TT EEEEEEE HHHHTSSGGG EEE SS TT B SSSS SS TT B SEEE TTS TTTSEEEEEEEEEE SS EE : ExpBur :beebebbbbbbebbeebbeeeeeeebebbbeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeeeeebbbbbbbbbeeeeeebbbbb: queryA 513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612 :***** * ******************* *************************** ********************* **************** *****: 8ajl_A_1 502:PKLSTELVKNQCVNFNFNGLTGTGVLTDSSKRFQPFQQFGRDVSDFTDSVRDPKTLEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPTAIHA: 601 SecStr : TTSEEEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE TT S EEEEE TTT EEEETT TTTHHHHTTT: ExpBur :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeeebbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb: queryA 613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712 :******** **** **************** ****************** ************* ****************** ********: 8ajl_A_1 602:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYSNNTIAIPTNFSISVTTEVMPVS: 701 SecStr :TTS HHHHGGGSSSSEEE SSSEEESSEE SS B SEEEETTEEEEEE -------- EEEEEEB S TTEEEEEEEEEEEEEEEEEE : ExpBur :eebeeebeebbeeeeebebeebbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebebebbbbb: queryA 713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812 :******** ********** ********************* *** **************** * ************* ********************: 8ajl_A_1 702:MAKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDKNTREVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 801 SecStr : EEEE HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHTT S EETTEEGGGTSB TTSSS SBHHHHHHHHHS SS: ExpBur :bbbbebebeebbbeebeebbebbeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebeebebeebbbeeeeeeebbebbbbbbeebeeee: Contact : b b bb queryA 813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912 :************** ********************** **************************************************************: 8ajl_A_1 802:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 901 SecStr :SSS GGGGS GGG HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHHHT THHHHTTHHHHHHHHHHH: ExpBur :eeeebeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeeb: queryA 913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012 :****************************************************************************************************: 8ajl_A_1 902:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1001 SecStr :HHHHHHHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebeeebeebeeebeebbebbeebbebbeebbeebeeeeebebbebebbeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe: queryA 1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112 :****************************************************************** ************ ********************: 8ajl_A_1 1002:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVSGNCDVVI:1101 SecStr :HHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS EE BTTTEEEEEETTSST: ExpBur :ebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbbbeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee: queryA 1113:GIINNTVYDPLQPELD:1128 :****************: 8ajl_A_1 1102:GIINNTVYDPLQPELD:1117 SecStr :T EE B TTGGG : ExpBur :eeeeeebeeeeeeeee: |