Protein Model on 8aja_A_1_C_1
(TEMPLATE: 
8aja
)Protein Model on 8aja_A_1_C_1
(TEMPLATE: 8aja
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1090 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1090 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | 45E(D) 47F 110K(T) 112Q 191D 192G 193F 221K 225G 227N 269N 352Y 356Y 360F(S) 361F 362S 364F 371A(P) 372T(S) 400G 414D 424N 427N(K) 489I 717S 722M 727D 729T(Q) 733N 736L 737Q 738Y 739G 740S 741F 747R 768K 769Q 770M 771Y 772K 779F 818Q 819Y 823L 824G 825D 826I 829R 831L 836K 837F 838N 843L 844P 845P 846L 847L 851M 854A 855Y 862G 865T 866A 868W 871G 872A 875A 876L 877Q 878I 879P 880F 882M 886Y 895Q 896N 899Y 900E 902Q 945V 948L 949S 957S 958V 960N 963L 964S 965R 966L 967D 970E 976D 984Q 987Q 991T 994L 995I 1009T 1012S 1013E 1016L 1017G 1021R (identity: 93.3 %/82.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8aja_A_1 identity=82.6% |
queryA 19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112
:* * ** * ** ******* ***** * **** **** **** * * ** ** ************* *** **** * **:
8aja_A_1 2:CGTISNKTPPNMNQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNADSNRIVRFDNPILPFGDGIYFAATEKSNVIRGWIFGSTLDNTSQ: 101
SecStr : SSB EEEESSTTEE SS SEEEEEEEEE TTEEEEEEEEEEEGGGTEEEE EE S EEEEEEESS EEEEEEESS STTS :
ExpBur :ebebeeeeeeeeeeeebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeebeeeeebbbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeeee:
Contact : b b b b
queryA 113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212
:* ** **** * *** *** * * ** * * ** *** ** * * ****** ************* **** ** * *** * ****:
8aja_A_1 102:SAIIVNNSTHIIIKVCNFQLCDDPMFTVSR--GQHYKTWVYTNARNCTYEYVSKSFQLDVSEKNGNFKHLREFVFKNVDGFLHVYSAYEPIDLARGLPSG: 199
SecStr :EEEEEEETTEEEEEEE EEEEEEEEEEET--TEEEEEEEEEE S EEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS :
ExpBur :bbbbbebbeeebbbbbbbebbebbbbbbbe--eeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebbbbbeeeebeeeebbbee:
Contact : bbb
queryA 213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312
:* **** ********* ** * *** * **************** ************* ** **** *** *********** * :
8aja_A_1 200:FSVLKPILKLPLGINITSFRVVMTMFSPTTSNWLAESAAYFVGYLKPTTFMLKFNENGTITDAVDCSQDPLSELKCTLKSFNVEKGIYQTSNFRVSPTQE: 299
SecStr : EEEEEEEE EEEEEEEEEESSSSS B EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEE S E:
ExpBur :ebebeeebebebebebebbbbbbbbbbeeeeebebbebbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee:
Contact : b b b b
queryA 313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412
:************* ***** ********* *** ***** ****** ********** ** **** **** * *** ***************:
8aja_A_1 300:VVRFPNITNLCPFDKVFNATRFPSVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGQTGVIADYNYKL: 399
SecStr :EEE B HHHHHS S BGGG EEEEE SEE GGGGTTT SEEEEESS GGGGGG EESEEEEEEEEEEGGGGGGSSTT SHHHHHT :
ExpBur :bbbbbeeeeebebeebbeeeebbbbbbbeeeebeebbbbbeebeeeeeeebeebeebeeeebebbbbbbbebbbbbbbbebbebbbeeeebebbbebbeb:
Contact : b b bbb b bb b
queryA 413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512
:**** *** **** ** ** ** * ** ***** ** * * * * * ** ******************:
8aja_A_1 400:PDDFTGCVIAWNTAKQDAG-----NYYYRSHRKTKLKPFERDLSN------------SDENGVRTLSTYDFNPNVPIEYQATRVVVLSFELLNAPATVCG: 482
SecStr : TT EEEEEEE TTT E-----EEEEE SS TT ------------B TTS B EEEEEE TTS GGGSEEEEEEEEEE SS EE :
ExpBur :eeebebbbbbbebbeebee-----ebebbeeeeeebeeeeebeee------------eeeeeeeebeebebeeebeeeebbbbbbbbbbeeeebebbbbb:
Contact : b b b b
queryA 513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612
:***** * ************ ****** ****** ******* ********** * ************************************** *****:
8aja_A_1 483:PKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGRDASDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIHA: 582
SecStr : TTSEEEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE TT S EEEEES TTT S EEEETT TTTHHHHTTT:
ExpBur :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeebbbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb:
queryA 613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712
:******** **** **************** ****************** ************* **** ** ********** ********:
8aja_A_1 583:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVS: 682
SecStr :TTS HHHHGGGSSSSEEEETTEEEESSEE SS B SEEEETTEEEEEE -------- EEEEEEB S TTEEEEEEEEEEEEEEEEEE :
ExpBur :ebbeeebeebbeeeeebebebbbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbb:
queryA 713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812
:******** ******* ** ***************** *** *** ** ************* * ************* ********************:
8aja_A_1 683:MAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 782
SecStr : EEEE HHHHHH S HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHS S S EETTEEGGGTSB TTSSS BHHHHHHHHHS TT:
ExpBur :bbbbbbebeebbbeebeebbebbeeeeeebeebeebbeebbebbbebbeebbbebeeeeeebeebebeebebeebbbeeeeeeebbebbbbbbeebeeee:
Contact : b b b b b bbbbbb b bbbbb b
queryA 813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912
:************** ********************** **************************************************************:
8aja_A_1 783:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 882
SecStr : S TTTTS GGG HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHHT HHHHHTTHHHHHHHHHHH:
ExpBur :ebbebeeeebeeeeeeeeebbebeeebbeeeeeebeeeebbebbbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeeb:
Contact : bb bbbb b b bbb bbbbb b bb b bb b bb bbbbbb b b bb bb b
queryA 913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012
:****************************************************************************************************:
8aja_A_1 883:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS: 982
SecStr :HHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:
ExpBur :beebeeebeeeeeebeebbebbeebbebbbebbeebeeeeebebbebebbeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe:
Contact : b bb bb b bbbbb b b b b b bb b b
queryA 1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112
:****************************************************************** ************ ************ *******:
8aja_A_1 983:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVI:1082
SecStr :HHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS B BTTTEEEEEETTSST:
ExpBur :ebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbbbeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee:
Contact :b bb b
queryA 1113:GIINNTVYDPLQPELD:1128
:****************:
8aja_A_1 1083:GIINNTVYDPLQPELD:1098
SecStr :T EE B TTGGG :
ExpBur :eeeeeebeeeeeeeee:
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[assembly_id:1]
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