Protein Model on 7zh5_A_1_G_1 (TEMPLATE: 7zh5 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS) A 1 (A) polymer(polypeptide(L)) [904 aa] Spike glycoprotein,Fibritin :SPIKE_SARS:WAC_BPT4
2 b G 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 269N (identity: 100.0 %/83.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7zh5_A_1 identity=83.1%
queryA        32:QHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFE: 131
                :***************************************        **************        *****************   ***********:
7zh5_A_1      19:QHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXXPVIPFKDGIYFAATXXXXXXXXWVFGSTMNNKSQSVIIIXXXTNVVIRACNFE: 118
SecStr          : EEESS  EE  SS    SSEEEEEEEE  TTEEEB   --------  EE SS EEEEE -------- EEESSSSTTS  EEB ---   EEEES   :    
ExpBur          :eeebbebbbbeeeeeeeeeebeebeeebbbbebebebee--------eebebeebbbbbee--------bbbbeeeeeebebbebe---eebebebbbee:    

queryA       132:LCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNF: 231
                :*                     ************                *********************      ***********************:
7zh5_A_1     119:LXXXXXXXXXXXXXXXXXXXXXDNAFNCTFEYISXXXXXXXXXXXXXXXXLREFVFKNKDGFLYVYKGYQPXXXXXXLPSGFNTLKPIFKLPLGINITNF: 218
SecStr          : ---------------------    S  EEEE ---------------- EEEEEEEETTEEEEEEEE  ------  SS  EEEEEEEEE      EE:    
ExpBur          :e---------------------ebeeeeeeeeee----------------bebbbbbeeeeebebbebeee------eeeeeebbeeeeebebeeebeeb:    

queryA       232:RAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNA: 331
                :****               *********************************************************************************:
7zh5_A_1     219:RAILXXXXXXXXXXXXXXXAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNA: 318
SecStr          :E   ---------------   B   EEEEEEEE  TT    EEEETTS HHHHHHHHHT SS  SEEEEEEEEEB    EEE         TTTTTT  :    
ExpBur          :ebee---------------ebbbbebeebebbbebeeebebeebbbbebebbbbbebeeeeeebeeeeeebeebebeeeeebbbbeeeeeebeeeeebee:    
Contact         :                                     b                                                              

queryA       332:TKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDAT: 431
                :          ***********             ***********************************           ****************    :
7zh5_A_1     319:XXXXXXXXXXRKKISNCVADYXXXXXXXXXXXXXCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGXXXXXXXXXXXLPDDFMGCVLAWNTRNXXXX: 418
SecStr          :---------- EEE SB    -------------  SS GGGGGG  BSSEEEE     GGGGGG S  -----------  SS   EEE      ----:    
ExpBur          :----------eeebeebebee-------------eeeeeeeebeeebbbebebbeeeeeeeeeeeeeee-----------eeeeeebbeeeeeeee----:    

queryA       432:STGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNG: 531
                :       ***************                        ********         *************************************:
7zh5_A_1     419:XXXXXXXKYRYLRHGKLRPFERXXXXXXXXXXXXXXXXXXXXXXXXLNDYGFYTXXXXXXXXXRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNG: 518
SecStr          :------- B S  SS   SS  ------------------------ B      ---------  EEEE  BSSSS  B           SS EEEE SS:    
ExpBur          :-------eeeeeeeeeeeeeee------------------------eeeeeeee---------ebbbbbbeeeeeebebbbeeeeeeeeeeebbebbbbe:    

queryA       532:LTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQT: 631
                :****************************************************************************************************:
7zh5_A_1     519:LTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQT: 618
SecStr          : EEEEEEEE      TT  B   TTS    EEETTTEEEEEETTS EEEEEEEE  SSS S  EEEESS  SSHHHHHHHHT BSS  SS     EEEET:    
ExpBur          :beeebebeeeeeebeeeeeebeeeeeeeebbebeeeebbebeeeebebbbbbbbbbbeeeeebbbbbeebebeebeebeeeeebebebeeeeeeeeeebe:    

queryA       632:QAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTEC: 731
                :*******************************          ***********************************************************:
7zh5_A_1     619:QAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXXSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTEC: 718
SecStr          :TTEEEES EEEEEEE  SEEETTTEEEES  ----------  EEEEE           SS EEEEEEEEEEEEEEEEE     EEE HHHHSS S SHH:    
ExpBur          :ebbbbbebeeeeeeeeeebebeeebbbbeee----------ebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebeeb:    

queryA       732:ANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDL: 831
                :********************************************************************************                   *:
7zh5_A_1     719:ANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXXXXXXXXXXXXXXXL: 818
SecStr          :HHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEE TTSS  TTSSS S HHHHHTTTTS   ------------------- :    
ExpBur          :beebeeeeeebeebeeebeebbebbbebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeebbebbebbeeebeee-------------------e:    

queryA       832:ICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQ: 931
                :****************************************************************************************************:
7zh5_A_1     819:ICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQ: 918
SecStr          :     TT EEE   SS HHHHHHHHHHHHHHHHTTTT SSSS      SSHHHHHHHHHTT  SHHHHHSHHHHHHHHHHHHHHHHHHHHT S SSHHHH:    
ExpBur          :eeeeeebebeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeebe:    

queryA       932:DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL:1031
                :****************************************************************************************************:
7zh5_A_1     919:DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL:1018
SecStr          :HHHHHHHHHHHHHHHGGG  SSSS SSTTTSSSS  SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS   STTTSSSS   :    
ExpBur          :ebeeebeebeeebeeeeeeeeebebeebeebbeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbbbbeeeebbbeeebb:    

queryA      1032:MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTV:1119
                :****************************************************************************************:
7zh5_A_1    1019:MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTV:1106
SecStr          :EEEEEEETTEEEEEEEEEEEEEEEEE   S EESSS EEEESSSEEE  SSS EEE SSS   B   TTTEE  S SSSS    TT  :    
ExpBur          :bbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbeeeeeebbbbeebbeeeebeeeebeeeeeeeebeeeeebbe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123