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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1020 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS:WAC_BPT4 | |
2 | b | JA 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 698T 699N 904Q 1053Q (identity: 100.0 %/94.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7zh2_C_1 identity=94.7% |
queryA 30:YTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACN: 129 :*********************************************** ****************************************************: 7zh2_C_1 17:YTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACN: 116 SecStr : EEEEESS EE SS SEEEEEEEEE TTEEEEEEEE SS B EE SS EEEEEEESS EEEEEEESSSSTTS EEEEEE SS EEEEEEE: ExpBur :eeebebbebbbbbeeeeebbeeeeebeeebbbbeeebebbebeeeeeebeebebeebbbbbbbbeeebbbbbbbbbebeeeeebbbbbeeeebebbebbb: queryA 130:FELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT: 229 :*********** ****************** ****************************************************: 7zh2_C_1 117:FELCDNPFFAVXXXXXXXXXTMIFDNAFNCTFEYISDAXXXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT: 216 SecStr :EEEEEEEE B --------- EEEEEEES EEE ---------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEEEEE : ExpBur :beeeeebebee---------eebeeeeeeeeeeeeeee----------ebeebebbbbbeeeeebebbebeeebeeeeebbeeeebbeeeeebebebebe: queryA 230:NFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVF: 329 :********* ************************************************************************************: 7zh2_C_1 217:NFRAILTAFXXXXXXXGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVF: 316 SecStr :EEEEEE B ------- SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S SEEEEE EEEE SB HHHHH: ExpBur :ebbbbbbee-------ebeebbbbbbebeebebbbebeeebebeebbbbeeebbbebbbeeeebebeebeeebeebeeeeebebbbbeeeeeebebeebb: queryA 330:NATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNID: 429 :****************************************************************************************************: 7zh2_C_1 317:NATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNID: 416 SecStr :T S BSTT EEEE SEE STHHHH SEEEESSS GGGSSS EEEEEEEEEEEEEGGGGGGSSSS SHHHHHT TT EEEEEEE HHHH: ExpBur :eeeebbbbeebeeeebeebebeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbeebbebbbeeeeeebbbebbebbeebebbbbbbebeeeb: queryA 430:ATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNF: 529 :****************************************************************************************************: 7zh2_C_1 417:ATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNF: 516 SecStr : BSS B EEE SS TT B SSS SSSTT B SEEE BBTTS GGGSEEEEEEEEEEESSS EE S SSEEEEEE: ExpBur :beeebbeebebbeeeeeebeeeeeeeeeeebbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbebbebeeeebebbbeeeeeeeeeeebbebbb: queryA 530:NGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVF: 629 :*************************************************************************** ************: 7zh2_C_1 517:NGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTXXXXXXXXXXXXXAWRIYSTGNNVF: 616 SecStr :TTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE S EEEEES TTT S EEEETT ------------- S S EE: ExpBur :bbeeeebbbeebeeebeeeebbbeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbbeeeeebbbbbeebebe-------------eeebeeeeeeee: queryA 630:QTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDST: 729 :******************************** **********************************************************: 7zh2_C_1 617:QTQAGCLIGAEHVDTSYECDIPIGAGICASYHXXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDST: 716 SecStr :EETTEEEES EE SS B SEEEETTEEEEE ---------- EEEEEB SSEEEEEEEEEEEEEEEEEE EEEE HHHHSSTT H: ExpBur :ebebbbbbebeeeeeeeebebebeeebbbbee----------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebe: Contact : bb queryA 730:ECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINAR: 829 :****************************************************************************************************: 7zh2_C_1 717:ECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINAR: 816 SecStr :HHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHTT SS S EETTEE TTSS SSSS SS HHHHHHHHHS S S S HHHHHHTTTS : ExpBur :ebeebbeeeeeebeebeeebeebbeebebbbeebbeebeeeeeeeeebebeebebeebbeeeebeeeebebbebbbeebeeeeeeeeeeeeebeeeeeee: queryA 830:DLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGK: 929 :************************************* ********************************************************: 7zh2_C_1 817:DLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAXXXXXXXAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGK: 916 SecStr : HHHHHHTTTEEEE SS HHHHHHHHHHHHHHHTT ------- TTHHHHHHHHHHT HHHHHHTHHHHHHHHHHHHHHHHHHHHS STTHH: ExpBur :eeebebeeebbeeeeeeeeeeebbeebbbbbbbbbee-------eeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebbeebeeeeeebee: Contact : b queryA 930:LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGY:1029 :****************************************************************************************************: 7zh2_C_1 917:LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGY:1016 SecStr :HHHHHHHHHHHHHHHHHGGG SSSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSS SSE: ExpBur :beebbeebeebbeebeeebeeeeebebbebeebeeebeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebbeeebeeeebbbeee: queryA 1030:HLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVS:1105 :****************************************************************************: 7zh2_C_1 1017:HLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVS:1092 SecStr :EEEEEEEEETTEEEEEEEEEEEEEEEEEEE S B TTTS EE SSSEEEE SSSEEEE SSS B GGG EE : ExpBur :bbbbbbbbbbebbbbbbbbbeeeeeeebeebeebeeeeeebeeeebbbbeeeeeebbbeeeebeeeeeeeeebeee: Contact : b |