Protein Model on 7sg4_C_1_YA_1 (TEMPLATE: 7sg4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) C 1 (C) polymer(polypeptide(L)) [1095 aa] Spike glycoprotein :SPIKE_SARS
2 b YA 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 189N 192G 225G 226I 227N (identity: 100.0 %/99.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7sg4_C_1 identity=99.8%
queryA        35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134
                :****************************************************************************************************:
7sg4_C_1      35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134
SecStr          :  S  EE  SS   SSEEEEEEEEE  TT   EEE   SSS     EE TT EEEEEEESS SS EEEEESSSSSSS EEEEEE SSSEEEEEE   GGG:    
ExpBur          :ebebbbbbbeeeeeeeeeeebebbbbbbeeebeeeebeeeeeebeebebeebbbbbbbbbebbbbbbbbbeebeeeeebbbbbbbebbbbbbbbbbbbee:    

queryA       135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234
                :****************************************************************************************************:
7sg4_C_1     135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234
SecStr          : TT   B STTBTTTB B TT S EEEEEE S TTHHHHSSSSSSSEEEEEEEEEETTEEEEEEEEEE SSTTS      EEEEEEEE       EEEEE:    
ExpBur          :ebeeeeeeeeeeeeebbbbeebeeeeeeeebeeebeebeeeeebbebbbbbbbbeeeeebbbbbbbeebeebeebeeeebbbeeebebebebebeebebb:    
Contact         :                                                      b  b                                bbb       

queryA       235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334
                :****************************************************************************************************:
7sg4_C_1     235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334
SecStr          :SSSS    TTTTT    EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S   SEEEEEEEEE   SEEEE       B STHHHHH SS :    
ExpBur          :bbbebbeeeeeebbbbbbbbbebeebebbbebeeeeebeebbbbeeebbbebebeeeebebeebeeebeebeeeeeeebbbeeeeeeebebeebbeeeeb:    

queryA       335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434
                :****************************************************************************************************:
7sg4_C_1     335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434
SecStr          :  TTT EEEEE SEE  HHHHHT    SB  BSSS HHHHTT  BSEEEEEEEEE GGGGGTSSSS   HHHHTTT   TTS  EEEEEEGGGTT  TT :    
ExpBur          :bbbeebeebebeebbbebeebbeeeebebeeeeeeebeebbeeebbbbbbbbbbbebebeeebbbeeebebbbbbbbbeeebebbbbbeebeeebeeeeb:    

queryA       435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534
                :****************************************************************************************************:
7sg4_C_1     435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534
SecStr          : SSSB   S SS  SSS S  S     STT    SSSTTS     B    TTS TTT  EEEEEEEEE  SS   EES         SSEEEEE SS EE:    
ExpBur          :beebbbbbeeeeeeeebbbebeebbbbeeeeebeeeeeebeebbeebbbeeebeebeebbbbbbbbbeeeeeeebbbbeeebeeeeeeebbebebeeeee:    

queryA       535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634
                :****************************************************************************************************:
7sg4_C_1     535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634
SecStr          :EEEEEE      TT  EEE TT  EEEEE SSS  EEEEE   EEEEEEEE  TTT S  EEEEESS HHHH     SSS   TTSSSTT SSEEEETTE:    
ExpBur          :ebbbeeeeeebeeeeeebeeeeeeebbbbbbeeeebbebeebeebbbbbbbbbbeebebbbbbbeebebeebbeeeeeeeebbeeeeebbbbeeeebeeb:    

queryA       635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734
                :****************************************************************************************************:
7sg4_C_1     635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734
SecStr          :EEES EE SS    SEEEETTEEEEEE   GGGTTTT EEEEEE   S        TTEEEEEEEEEEEEEEEEEE    EEEE HHHHHHTT HHHHHH:    
ExpBur          :bbbbbbebeeeeeeebebeeebbbbeeeeeeeeeeeeebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebeebeeb:    

queryA       735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834
                :****************************************************************************************************:
7sg4_C_1     735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834
SecStr          :GGGG THHHHHHHHHHHHHHHHHHHHHHHHTT SS     S  EETTEE TTTSB TTSSSSSBHHHHHHHHHS  SSS    TTS        TTT SS:    
ExpBur          :beeeeeebeebeeebeebbebbbebbeebbeebeeebeeeeeeebebbebeebbbeeeeeeeebebbebbbebbbebeebeeeeeeeeebeebeeeeeeb:    

queryA       835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934
                :****************************************************************************************************:
7sg4_C_1     835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934
SecStr          :SSSSSEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHHTT  THHHHTTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHH:    
ExpBur          :beeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeebeeebbeebeebbeebbeebeebbeebeebbebb:    

queryA       935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034
                :*********************************  *****************************************************************:
7sg4_C_1     935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034
SecStr          :HHHHHHHHHHHHTTT  TTSS SSHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS   STTTSSSSEEEEEE:    
ExpBur          :eebbebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbbebeeeebbbeeebbbbb:    

queryA      1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129
                :***********************************************************************************************:
7sg4_C_1    1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129
SecStr          :EEEETTEEEEEEEEEEEEEEEEEEE S EE SSSEEEESSSEEEE SSSEEEE SSS   B  BTTTEEEES TTSSTT EE   B SSHHHHT :    
ExpBur          :bbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbeeeeebbbbbebbbeeeebbeeebeeeeeeeeeeeeeeeebeeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123