Protein Model on 7akj_A_1_JA_1 (TEMPLATE: 7akj )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) A 1 (C) polymer(polypeptide(L)) [1084 aa] Spike glycoprotein :Q5DIC5_CVHSA
2 b JA 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 699N 904Q (identity: 100.0 %/97.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7akj_A_1 identity=97.3%
queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :*********************************************************** ****************************************:
7akj_A_1       1:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 100
SecStr          :     TT      EEEE TT   B   SS   S EEEEEEEE  TT EEEEEEE TT      EE TT EEEEEEESS  EEEEEEESS SSSS EEEEE:    
ExpBur          :eeeebeeeeeeeeeeeebbebbbbeeeeeeeeeeeeebeebbbbbebebebbebeeeebbbeebebeebbbbbbbbbbebbbbbbbbeebeeeeebbbbb:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :****************************************************************************************************:
7akj_A_1     101:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 200
SecStr          :  SS  EEEEE   EEEEEEEEE TTT  EEEEEEES   S   EEE           SS   EEEEEEEEEETTEEEEEEEEEE   SS        BE:    
ExpBur          :eeeeebebebbbbebbebbbbbbbeeeeeeeeeebeeeeeeeeeeeeeeeeeeebeeeeeebeebebbbbbeeeeebebbebeeeeeeeeebbeeeeebe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :**********************     *************************************************************************:
7akj_A_1     201:PIFKLPLGINITNFRAILTAFSXXXXTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 300
SecStr          :EEEEE       EEEEEEEEE ----  B   EEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT S   SEEEEEEEEEE    EEE   :    
ExpBur          :eeeebebeeebeebbbbbbbbe----eeebeebbbbbbebeebebbbebeeebebeebbbbebebbbebebeeeeeebeeeeeeeeebebeeebebbbbe:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :****************************************************************************************************:
7akj_A_1     301:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 400
SecStr          :    B  THHHHT S    GGG EEEEE S B  SHHHHS S  SEEEE SS GGGGGG EESEEEEEEEEEEGGGGGGSSTT  SHHHHTT    TT  :    
ExpBur          :eeeeebebeebbeeeebeebebbeeeebeebeeebeeeeeeeeeeeeeeeebebeebbeebbbbbebbbbbbbbeeeebbeeeeeeebbbebbebeeebe:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :****************************************************************************************************:
7akj_A_1     401:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 500
SecStr          :EEEEEEE HHHH  SS EEEEEEE   SS   TT        B TTSS   TTSTT B SEEEEEE TT  TTTSEEEEEEEEEE  SS   EE      :    
ExpBur          :bbbbbbebeeebbeeebeeebeebeeeeeebeeeeeeeeeeebbeeeeebeeeeeebeebbeeebbeeebeeeebbbbbbbbebeeeeeebbbbbeeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :****************************************************************************************************:
7akj_A_1     501:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 600
SecStr          :   TTSEEEEESSS EEEEE EE      TT  EEE GGG EEEEE TTT  EEE     EEEEEEEE  TTT    EEEEET  HHHHHHHHGGG EES:    
ExpBur          :ebeeeebbebbbbeeeeebebeeeeeebeeeebeeeeeeeeeebbebeeeeebbebeebeeebbbbbbbbeeeeeebbbbbeebebeebeebeeeeebee:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :**********************************************       ***********************************************:
7akj_A_1     601:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 700
SecStr          :  SS    S EEEETTEEEES EE S     SEEEETTEEEEEEE ------- EEEEEEE   S        SSEEEEEEEEEEEEEEEEEE     EE:    
ExpBur          :ebeeeeeeeeeeebeebbbbebeeeeeeeeeebebeeebbbbeeee-------eebbbbbeeeeeeeeeeeeeeeeeebeeebebebeeebbbbbbebbe:    
Contact         :                                                                                 b                  

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :*******************************************************************************************         :
7akj_A_1     701:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 800
SecStr          :E HHHHHTTT STTHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEE TTTS  SSSS  S HHHHHHHHH ---------:    
ExpBur          :bebeebbbeebeebeeebeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbebbeeee---------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :*******      ***************************************************************************************:
7akj_A_1     801:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 900
SecStr          :  BB   ------   B  TT EEE   SS HHHHHHHHHHHHHHHHHTTTGGGSSS     HHHHHHHHHHTTT  THHHHHTHHHHHHHHHHHHHHHH:    
ExpBur          :eebeeee------eeeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeeeebeeebbeeeeeebbeebeebbeebe:    
Contact         :                                                                                      b             

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
7akj_A_1     901:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1000
SecStr          :HHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG  TT S S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:    
ExpBur          :eebeebeeebeebeebeeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbee:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
7akj_A_1    1001:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1100
SecStr          :   STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEE  S EEETTEEEEESSSEEEE SSSEEEE SSS   B  BGGGEEE S GGGSSS EE :    
ExpBur          :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebebbeeeeebebbbeeeebeeebbeeebeeeeebeeeeeeeee:    

queryA      1118:TVYDPLQPEL:1127
                :**********:
7akj_A_1    1101:TVYDPLQPEL:1110
SecStr          :  B TTTTT :    
ExpBur          :ebeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123