Protein Model on 6nb7_B_1_BA_1 (TEMPLATE: 6nb7 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) B 1 (B) polymer(polypeptide(L)) [1032 aa] Spike glycoprotein :SPIKE_CVHSA
2 b BA 1 (b) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 691N (identity: 100.0 %/92.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6nb7_B_1 identity=92.7%
queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :****       ************************************************ ****************************************:
6nb7_B_1      37:RCTTXXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr          :    -------  EEEE TT  EE  SS    SEEEEEEEEE  TT EEEEEEEETTEE   EEE TTEEEEEEEESS  EEEEEEESSSSTTS EEEEE:    
ExpBur          :eeee-------eeeeeebbbbebeeeeeeeeeeeeeebebebbebeeebeebeeeeeeeeeeeeebeebbbeeeebeeebebebebbeeeeeeeebeeee:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :********************           *********************         ***************************************:
6nb7_B_1     137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXXHTMIFDNAFNCTFEYISDAFSXXXXXXXXXFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr          :E SSSEEEEEEEEEE SS  -----------   SEEEEEEEEEEEE     ---------  EEEEEEEEEETTEEEEEEEEEE   SSS  S   EEE:    
ExpBur          :eeeebeeebbbbbbebeeee-----------eebebeeeeeeebeeeeeeee---------eeeeeeebebeeeebebebeeeeebebeeeeeeeeeebe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :*******************             ********************************************************************:
6nb7_B_1     237:PIFKLPLGINITNFRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr          :EEEEE      SEEEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S   SEEEEEEEEEE   SEE    :    
ExpBur          :eeeeeebeeeeebbbebbe-------------eebbeeebeebebbbebeeebeeeeebbbebeeebbbebeeeeeebeebeeeeeebeeeeeeebebbe:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :****************************************************************************************************:
6nb7_B_1     337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr          :S   B S HHHHS S   BSTT EEEEE SEE   HHHHT SS SEEEEESS GGGGGG  BS EEEEEEEEEGGGGGGSSTT  SHHHHHT B  SS E:    
ExpBur          :eeeeebeeeeeeeeeeeebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebebebeebbbbeeeeeebeeeeeeeebbebbbbeeeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :******************************************************************        ***********      *********:
6nb7_B_1     437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFXXXXXXXXQPYRVVVLSFEXXXXXXTVCGPKLST: 536
SecStr          :EEEEEEE TTTT  TT  TT EEE   SS   BT        B TTS    TTSTT B SEEE   -------- EEEEEEEEE ------ EE      :    
ExpBur          :beeebbebeeeeeeeeebeebbbbeeeeeebeeebeeeeeeebeeeeeeeeeeeeebeebeeebeb--------ebbbebeeeee------ebeeeeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :****************************************************************************************************:
6nb7_B_1     537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr          :   TTSEEEEEETTEEEEEEEEE      TT  EEE SSSSEEEEE TTT  EEEEE   EEEEEEEE  TTT    EEEEETS HHHHHHHHHTT EES:    
ExpBur          :eeeeeebbebeeeeeeeebbeeeeeeeebeeeeeeeeeeeeebbbbbeeeeebbbeeebeebebbbbbbbeeeeeeebbbbbebebeebeebeeeebbee:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :**********************************************       ***********************************************:
6nb7_B_1     637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr          :  SS    S EEEETTEEEES EEEEEEE  SEEEETTEEEEEEE ------- EEEEEEEE  S        SSEEEEE  EEEEEEEEEEE    EEE:    
ExpBur          :eeeeeeeeebeeebeebbbbebeeeeeeeeeebeeeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe:    
Contact         :                                                                         b                          

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :*******************************************************************************************         :
6nb7_B_1     737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr          :E HHHHH SS HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH   SS     S   BTTB  TTTSB TTSS  SBHHHHHHTT  ---------:    
ExpBur          :bebeebbbeeeeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeeeeebebeebbbeeeeeeeebebbbbbeeee---------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :******        **************************************************************************************:
6nb7_B_1     837:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr          :  BEE -------- EE  TT EEEE  SS HHHHHHHHHHHHHHHHHSGGGTTTSS     HHHHHHHHHHHHT  THHHHHTHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeee--------eeeebebbbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:    

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
6nb7_B_1     937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr          :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG  TTSS SSTHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:    
ExpBur          :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebeebeeebeeeebeeebeebbebbbebbeebbeebeeebeebeebbeebbebbebbbbb:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6nb7_B_1    1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr          :   STTSSSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEEEES EEETTEEEEESSSEEEEETTEEEEEETTEEEEE  BGGGEEEEEETTS TT EE :    
ExpBur          :ebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeebebebbebbbeeeebeeeeebebbeeeeeeebbbebbeeeeebbeeebeeeeeeeeeeeeeeb:    

queryA      1118:TVYDPLQPEL:1127
                :**********:
6nb7_B_1    1137:TVYDPLQPEL:1146
SecStr          :  B THHHH :    
ExpBur          :ebeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123