Protein Model on 6nb7_B_1_A_1
(TEMPLATE: 
6nb7
)Protein Model on 6nb7_B_1_A_1
(TEMPLATE: 6nb7
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1032 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [1049 aa] | Spike glycoprotein :SPIKE_CVHSA | 301Q 306R 535T 544R 545F 548F 549Q 550Q 551F 552G 553R 557D 573I 574S 575P 578F 633A 651P 653G 654A 655G 656I 657C 679M 681L 683A 684D 685S 686S 687I 688A 690S 693T 694I 695A 697P 939Q 943T 947Q 951N 952F 953G 977R 984Q 988T 992Q 999E 1021R 1022V 1027K 1029Y 1056N 1061P 1071F 1072P 1076V 1089R 1103F 1105S 1112I (identity: 100.0 %/92.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6nb7_B_1 identity=92.7% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:**** ************************************************ ****************************************:
6nb7_B_1 37:RCTTXXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr : ------- EEEE TT EE SS SEEEEEEEEE TT EEEEEEEETTEE EEE TTEEEEEEEESS EEEEEEESSSSTTS EEEEE:
ExpBur :eeee-------eeeeeebbbbebeeeeeeeeeeeeeebebebbebeeebeebeeeeeeeeeeeeebeebbbeeeebeeebebebebbeeeeeeeebeeee:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:******************** ********************* ***************************************:
6nb7_B_1 137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXXHTMIFDNAFNCTFEYISDAFSXXXXXXXXXFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr :E SSSEEEEEEEEEE SS ----------- SEEEEEEEEEEEE --------- EEEEEEEEEETTEEEEEEEEEE SSS S EEE:
ExpBur :eeeebeeebbbbbbebeeee-----------eebebeeeeeeebeeeeeeee---------eeeeeeebebeeeebebebeeeeebebeeeeeeeeeebe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:******************* ********************************************************************:
6nb7_B_1 237:PIFKLPLGINITNFRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr :EEEEE SEEEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEE :
ExpBur :eeeeeebeeeeebbbebbe-------------eebbeeebeebebbbebeeebeeeeebbbebeeebbbebeeeeeebeebeeeeeebeeeeeeebebbe:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6nb7_B_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr :S B S HHHHS S BSTT EEEEE SEE HHHHT SS SEEEEESS GGGGGG BS EEEEEEEEEGGGGGGSSTT SHHHHHT B SS E:
ExpBur :eeeeebeeeeeeeeeeeebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebebebeebbbbeeeeeebeeeeeeeebbebbbbeeeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************** *********** *********:
6nb7_B_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFXXXXXXXXQPYRVVVLSFEXXXXXXTVCGPKLST: 536
SecStr :EEEEEEE TTTT TT TT EEE SS BT B TTS TTSTT B SEEE -------- EEEEEEEEE ------ EE :
ExpBur :beeebbebeeeeeeeeebeebbbbeeeeeebeeebeeeeeeebeeeeeeeeeeeeebeebeeebeb--------ebbbebeeeee------ebeeeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6nb7_B_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr : TTSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEEETS HHHHHHHHHTT EES:
ExpBur :eeeeeebbebeeeeeeeebbeeeeeeeebeeeeeeeeeeeeebbbbbeeeeebbbeeebeebebbbbbbbeeeeeeebbbbbebebeebeebeeeebbee:
Contact : b bb bbbbbb b bbb b
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6nb7_B_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEE EEEEEEEEEEE EEE:
ExpBur :eeeeeeeeebeeebeebbbbebeeeeeeeeeebeeeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe:
Contact : b b bbbbb b b bbbbbb b bbb b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************* :
6nb7_B_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr :E HHHHH SS HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S BTTB TTTSB TTSS SBHHHHHHTT ---------:
ExpBur :bebeebbbeeeeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeeeeebebeebbbeeeeeeeebebbbbbeeee---------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** **************************************************************************************:
6nb7_B_1 837:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr : BEE -------- EE TT EEEE SS HHHHHHHHHHHHHHHHHSGGGTTTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHH:
ExpBur :ebbeee--------eeeebebbbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6nb7_B_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS SSTHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:
ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebeebeeebeeeebeeebeebbebbbebbeebbeebeeebeebeebbeebbebbebbbbb:
Contact : b b b bbb b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6nb7_B_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr : STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EEETTEEEEESSSEEEEETTEEEEEETTEEEEE BGGGEEEEEETTS TT EE :
ExpBur :ebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeebebebbebbbeeeebeeeeebebbeeeeeeebbbebbeeeeebbeeebeeeeeeeeeeeeeeb:
Contact : bb b b b b bb b b b b b
queryA 1118:TVYDPLQPEL:1127
:**********:
6nb7_B_1 1137:TVYDPLQPEL:1146
SecStr : B THHHH :
ExpBur :ebeeeeeeee:
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[assembly_id:1]
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