Protein Model on 6nb7_A_1_T_1
(TEMPLATE: 
6nb7
)Protein Model on 6nb7_A_1_T_1
(TEMPLATE: 6nb7
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1049 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | T 1 (T) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 1055R 1080N 1081G 1085F (identity: 100.0 %/94.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6nb7_A_1 identity=94.2% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:**** ********************************************** ****************************************:
6nb7_A_1 37:RCTTXXXXXXXXXTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr : --------- EEE TEEEEE SS SEEEEEEEEE TT EEEEEEEETTEE EE TTEEEEEEEESS EEEEESSSSTTS EEEEE:
ExpBur :eeee---------eebebbeebbbeeeeeebeeeeeebebebbebeeebeebeeeeeeeeeeeeebeebebeebebeeebebeeebbeeeeeeeebeeee:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:********************** ********************** ***************************************:
6nb7_A_1 137:NNSTNVVIRACNFELCDNPFFAXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXXFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr :E SS EEEEEE EEEEEEEE -------- EEEEEE S EEEE --------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEE:
ExpBur :eeeebeeebbbbbbebeeebbe--------eeebebeeeeeeebeeeeeeee---------eeebebbbebeeeebeeebeeeeebebeeeeeeeeeebe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************* ********************************************************************:
6nb7_A_1 237:PIFKLPLGINITNFRAILTAFXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr :EEEEE SEEEEE B ----------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEEE :
ExpBur :eeeeeebebeeebbbebbeee-----------eebbeeeebeeebbbbbeeeeebeebbbbebebbbbbebeeeeeebeebeeeeeebebeeeeebeebe:
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6nb7_A_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr : HHHHS S BSTT EEEEE SEE TTTTTSS SEEEE SS TGGGGG BSEEEEEEEEEEHHHHTTSSTT SHHHHHT SS :
ExpBur :eeeeebeeeeeeeeeeeebbbebeeeebeebeeebeeeeeeeeeeeeeebeeeeeeeeeeebbeebeeebbbbeeeeebeeeeeeeebbebbebeeeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6nb7_A_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536
SecStr :SEEEEEE TTTT BTT B EEE SS TT B TTS TTSTT B SEEE BBTTS GGGSEEEEEEEEEE SSSS EE :
ExpBur :eebebbebbeeebeeeebeebbbbeeeeeebeeebeeeeeeebeeeeeeeeeeeeebeeeeeebebbeeeeeeebbbbeeeeeeeeeeeeeebeeeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6nb7_A_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr : SSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEESSS HHHHHHHHHTT EES:
ExpBur :eeeeeebbeeeeeebeeebbbeeeeeeebeebeeeeeeeeeebbbebeeeeebeeeeebeebebbbbbbbeeeeeeebbbbbebebeebeebeeeebeee:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6nb7_A_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEES EEEEEEEEEEE EEE:
ExpBur :ebeeeeeeebeeebeebbbbebeeeeeeeeeebeeeeebbbbeeee-------ebebbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbebbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************* :
6nb7_A_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr :E HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SSS S EETTEE TTTS TTSS S HHHHHHHTT ---------:
ExpBur :bebeebbbeebebbeeebeeeeeeeeebeeebeeebebbeebbeebbebbeeeeeeeeebeeebbebeebbbeeeeeeeebebbbebbeee---------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** **************************************************************************************:
6nb7_A_1 837:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr : BEE -------- EE TT EEEE SS HHHHHHHHHHHHHHHHHHGGGTTTSS HHHHHHHHHHTTTS THHHHHTHHHHHHHHHHHHHHHH:
ExpBur :eebeee--------eeeebebbbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeeeebeeebbeeeeeebbeebeebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6nb7_A_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr :HHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:
ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbbebbebbbebbeebbeebeebbeebeeebeebeebbebbbbb:
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6nb7_A_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr : STTSS SSEEEEEEEEEETTEEEEEEEEEEE EEEEEE S EEETTEEEEESSSEEEEETTEEEEE TTS B BGGGEEEEEETTS TT EE :
ExpBur :ebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeebbbeeeeeebbeeeeeebbbbeebeeeeebeeeebeeeeeeeeeeebeeb:
Contact : b bb b
queryA 1118:TVYDPLQPEL:1127
:**********:
6nb7_A_1 1137:TVYDPLQPEL:1146
SecStr : B THHHH :
ExpBur :ebbeeeeeee:
|
[assembly_id:1]
[help]