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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1049 aa] | Spike glycoprotein :SPIKE_CVHSA | |
2 | b | O 1 (O) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 602N 630Q (identity: 100.0 %/94.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6nb7_A_1 identity=94.2% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :**** ********************************************** ****************************************: 6nb7_A_1 37:RCTTXXXXXXXXXTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136 SecStr : --------- EEE TEEEEE SS SEEEEEEEEE TT EEEEEEEETTEE EE TTEEEEEEEESS EEEEESSSSTTS EEEEE: ExpBur :eeee---------eebebbeebbbeeeeeebeeeeeebebebbebeeebeebeeeeeeeeeeeeebeebebeebebeeebebeeebbeeeeeeeebeeee: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :********************** ********************** ***************************************: 6nb7_A_1 137:NNSTNVVIRACNFELCDNPFFAXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXXFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236 SecStr :E SS EEEEEE EEEEEEEE -------- EEEEEE S EEEE --------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEE: ExpBur :eeeebeeebbbbbbebeeebbe--------eeebebeeeeeeebeeeeeeee---------eeebebbbebeeeebeeebeeeeebebeeeeeeeeeebe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************* ********************************************************************: 6nb7_A_1 237:PIFKLPLGINITNFRAILTAFXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336 SecStr :EEEEE SEEEEE B ----------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEEE : ExpBur :eeeeeebebeeebbbebbeee-----------eebbeeeebeeebbbbbeeeeebeebbbbebebbbbbebeeeeeebeebeeeeeebebeeeeebeebe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 6nb7_A_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436 SecStr : HHHHS S BSTT EEEEE SEE TTTTTSS SEEEE SS TGGGGG BSEEEEEEEEEEHHHHTTSSTT SHHHHHT SS : ExpBur :eeeeebeeeeeeeeeeeebbbebeeeebeebeeebeeeeeeeeeeeeeebeeeeeeeeeeebbeebeeebbbbeeeeebeeeeeeeebbebbebeeeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 6nb7_A_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536 SecStr :SEEEEEE TTTT BTT B EEE SS TT B TTS TTSTT B SEEE BBTTS GGGSEEEEEEEEEE SSSS EE : ExpBur :eebebbebbeeebeeeebeebbbbeeeeeebeeebeeeeeeebeeeeeeeeeeeeebeeeeeebebbeeeeeeebbbbeeeeeeeeeeeeeebeeeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 6nb7_A_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636 SecStr : SSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEESSS HHHHHHHHHTT EES: ExpBur :eeeeeebbeeeeeebeeebbbeeeeeeebeebeeeeeeeeeebbbebeeeeebeeeeebeebebbbbbbbeeeeeeebbbbbebebeebeebeeeebeee: Contact : b queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** ***********************************************: 6nb7_A_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736 SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEES EEEEEEEEEEE EEE: ExpBur :ebeeeeeeebeeebeebbbbebeeeeeeeeeebeeeeebbbbeeee-------ebebbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbebbe: Contact : b queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************* : 6nb7_A_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836 SecStr :E HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SSS S EETTEE TTTS TTSS S HHHHHHHTT ---------: ExpBur :bebeebbbeebebbeeebeeeeeeeeebeeebeeebebbeebbeebbebbeeeeeeeeebeeebbebeebbbeeeeeeeebebbbebbeee---------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** **************************************************************************************: 6nb7_A_1 837:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936 SecStr : BEE -------- EE TT EEEE SS HHHHHHHHHHHHHHHHHHGGGTTTSS HHHHHHHHHHTTTS THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeee--------eeeebebbbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeeeebeeebbeeeeeebbeebeebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6nb7_A_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036 SecStr :HHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbbebbebbbebbeebbeebeebbeebeeebeebeebbebbbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6nb7_A_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136 SecStr : STTSS SSEEEEEEEEEETTEEEEEEEEEEE EEEEEE S EEETTEEEEESSSEEEEETTEEEEE TTS B BGGGEEEEEETTS TT EE : ExpBur :ebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeebbbeeeeeebbeeeeeebbbbeebeeeeebeeeebeeeeeeeeeeebeeb: queryA 1118:TVYDPLQPEL:1127 :**********: 6nb7_A_1 1137:TVYDPLQPEL:1146 SecStr : B THHHH : ExpBur :ebbeeeeeee: |