Protein Model on 6nb6_C_1_D_1 (TEMPLATE: 6nb6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS) C 1 (C) polymer(polypeptide(L)) [1055 aa] Spike glycoprotein :SPIKE_CVHSA
2 b D 1 (H) polymer(polypeptide(L)) [123 aa] S230 heavy chain 475Y (identity: 100.0 %/94.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6nb6_C_1 identity=94.8%
queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :*****      ************************************************ ****************************************:
6nb6_C_1      37:RCTTFXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr          :     ------  EEEE TT  EE  SS    SEEEEEEEEE  TT EEEEEEEBTTB     EE TT EEEEEEESS    EEEEESS STTS EEEEE:    
ExpBur          :eeeee------eeeebebbebebbeeeeeeeeeeeeebebebbbbeeebebbeeeeeeebeeebebeebbbbbbebeeeeebbeebbeeeeeeeebeeee:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :**********************         ********************           **************************************:
6nb6_C_1     137:NNSTNVVIRACNFELCDNPFFAXXXXXXXXXHTMIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr          :E SS EEEEEE   EEEEEEE --------- EEEES   S  EEEE    ----------- EEEEEEEEEETTEEEEEEEEEE   SSS      EEE:    
ExpBur          :eeeebeebbbbbbbebeeebbe---------eeeebeeeeeeeeeeeeeee-----------eebebbbebeeeeebebbeeebeeeeeeebeeeeebbe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :**********************       ***********************************************************************:
6nb6_C_1     237:PIFKLPLGINITNFRAILTAFSXXXXXXXTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr          :EEEEEE     SEEEEEEE   -------   EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S   SEEEEEEEEEE   SEEEE  :    
ExpBur          :eeeeeeeeeebebbbbbeeeee-------eeeebbbbbebbebebbbbbbeebebebbbbbbbebbbbbebeeeeeebeebeeebeebebeeeeebebee:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :****************************************************************************************************:
6nb6_C_1     337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr          :S   B   HHHHS S   BGGG EEEEE SEE   HHHHS SS SEEEESSS GGGGGG  BSEEEEEEEEEEGGGGGGSSTT  SHHHHHT    SS  :    
ExpBur          :eeeeeeeeeeeeeeeeeebbeebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebbbebebebbebeeeeebeeeeeeeebbebbebeeeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :****************************************************************************************************:
6nb6_C_1     437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536
SecStr          : EEEEEE TTTT BTT BTT EEE   SS   TT        B TTS    TTSTT B SEEE  BBTTS GGGSEEEEEEEEEE  SS   EE      :    
ExpBur          :beeebbebbeeebeeeebeebbbbeeeeeebeeebeeeeeeebeeeeeeeeeeeeebeebeeebebbeeeeeebbbbbeebeeeeeeeeeeebeeeeeee:    
Contact         :                                                         b                                          

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :****************************************************************************************************:
6nb6_C_1     537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr          :    SSEEEEEETTEEEEEEEEE      TT  EEE SSSSEEEEE TTT  EEEEE   EEEEEEEE  TTT    EEEEET  HHHHHHHHHTT EES:    
ExpBur          :ebbeeebbebebeebeeebbbeeeeeeeeeebeeeeeeeeeebbbebebeeebbbbeebeebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebee:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :***********************************************     ************************************************:
6nb6_C_1     637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSXXXXXSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr          :  SS    S EEEETTEEEES EEEEEEE  SEEEETTEEEEEEE  -----  EEEEEEEE  S        SSEEEEES EEEEEEEEEEE    EEE:    
ExpBur          :ebeeeeeeeeeeebeebbbbebbeeeeeeeeebebeeebbbbeeeee-----eeeebbbbeeeeeeeeeeeeeeeeeebeeebebebeeebbbbbbeebe:    

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :*******************************************************************************************         :
6nb6_C_1     737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr          :E HHHHHSSS HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEE TTTSB TTSS  SBHHHHHHHTT ---------:    
ExpBur          :bebeebbbeebeebbebbeeeeeeeeebeeebeebbeebbebbeebbeebeeeeeeeeeeeeebbebeebbbeeeeeeeebebbebbeeee---------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                : ******       **************************************************************************************:
6nb6_C_1     837:XYGECLGXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr          :- BEE  ------- EE  TTSEEEE  SS HHHHHHHHHHHHHHHHHHGGGTTTSS     HHHHHHHHHHHHT  HHHHHHTHHHHHHHHHHHHHHHH:    
ExpBur          :-ebeeee-------eeeeeebebeeeeeebeeeebbeebbbbbbbbeebbeebeeeeeeeeebeebbbebbeeeebeeebbeeeeeebbebbeebbeebb:    

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
6nb6_C_1     937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr          :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG  TTSS S THHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:    
ExpBur          :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebebbeeeeeeeebeeebbebbebbeebbeebbeebeeebeebeebbeebbebbebbbbb:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6nb6_C_1    1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr          :   STTSS SSEEEEEEEEEETTEEEEEEEEEEE  EEEEEE SEEEETTEEEEESSSEEEEETTEEEEE TTS   B  BTTSEEEEEESSSSTTEEE :    
ExpBur          :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeeebbbbeebbeeeebbeeebeeeeebeeeeebeeb:    

queryA      1118:TVYDPLQPEL:1127
                :**********:
6nb6_C_1    1137:TVYDPLQPEL:1146
SecStr          :  B TTTTT :    
ExpBur          :ebeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123