[pdbjlvh2]Protein Model on 6nb6_B_1_DA

Protein Model on 6nb6_B_1_DA_1 (TEMPLATE: 6nb6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SPIKE_SARS)	B 1 (B)	polymer(polypeptide(L)) [1026 aa]	Spike glycoprotein :SPIKE_CVHSA
2	b		DA 1 (d)	branched(oligosaccharide)	alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	1055R 1080N 1081G 1083S 1085F (identity: 100.0 %/92.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6nb6_B_1 identity=92.2%

queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :****       ************************************************ ****************************************:
6nb6_B_1      37:RCTTXXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr          :    -------  EEEE TEEEEE  SS    SEEEEEEEEE  TT EEEEEEEETTEE   EEE TTEEEEEEEESS  EEEEEEESSSSTTS EEEEE:    
ExpBur          :eeee-------eeeebebbebbbbeeeeeebeeeeeeeebebbebebebebbeeeeeeebeeeeebeebbbebbbbeeebebebeebeeeeeeeebeeee:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :********************          **********************        ****************************************:
6nb6_B_1     137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr          :E SSSEEEEEEEEEE SS  ----------    SEEEEEEEEEEEE     --------   EEEEEEEEEETTEEEEEEEEEE   SSS    EEEEE:    
ExpBur          :eeeebeeebbbbbbebeeee----------eeebeeeeeeeeebeeeeeeee--------ebebeebbbebebeeeeeebeeeeebebeeeeeeeeebbe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :*******************            *********************************************************************:
6nb6_B_1     237:PIFKLPLGINITNFRAILTXXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr          :EEEEE      SEEEEEE ------------ EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S   SEEEEEEEEEE   SEE    :    
ExpBur          :eeeeeebeeeeebbbebee------------eeebbebebbebebbbebeeebebebbbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbee:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :****************************************************************************************************:
6nb6_B_1     337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr          :S   B   HHHHT S   BSTT EEEEE SEE   HHHHT SS SEEEEESS GGGGGG  BS EEEEEEEEEGGGGGGSSBT  SHHHHHT  B SS E:    
ExpBur          :eeeeebeeeeeeeeeebebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebebebeeebbbeeeeeebeeeeeeeebbebbbbeeeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :******************************************************************        ***********      *********:
6nb6_B_1     437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFXXXXXXXXQPYRVVVLSFEXXXXXXTVCGPKLST: 536
SecStr          :EEEEEEE TTTT  TT  TT EEE   SS   TT        B TTS    TTSTT B SEEE   -------- EEEEEEEEE ------ EE      :    
ExpBur          :beeebbebeeebeeeeebeebebbeeeeeebeeeeeeeeeeebeeeeeeeeeeeeebeebeeebeb--------ebbbebeeeee------ebeeeeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :****************************************************************************************************:
6nb6_B_1     537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr          :   TTSEEEEEETTEEEEEEEEE      TT  EEE SSSSEEEEE TTT  EEEEE   EEEEEEEE  TTT    EEEEETS HHHHHHHHHTT EES:    
ExpBur          :eeeeeebbebebeebeeebbbeeeeeebeeeeeeeeeeeeeeebbebeeeebbbbbeebeebbbbbbbbbeeeeebebbbbeebebeebeebeeeeebee:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :**********************************************       ***********************************************:
6nb6_B_1     637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr          :  SS    S EEEETTEEEES EEEEEEE  SEEEETTEEEEEEE ------- EEEEEEEE  S        SSEEEEE  EEEEEEEEEEE    EEE:    
ExpBur          :ebeeeeeeeeeeebeebbbbebeebeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe:    

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :*******************************************************************************************         :
6nb6_B_1     737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr          :E HHHHH SS HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH   SS     S   BTTB  TTTSB TTSS  SBHHHHHHTT  ---------:    
ExpBur          :bebeebbbeebeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeebebbebeebbbeeeeeeeebebbbbbbeee---------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :                 ***********************************************************************************:
6nb6_B_1     837:XXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr          :-----------------  TT EEEE  SS HHHHHHHHHHHHHHHHHSGGGTTTSS     HHHHHHHHHHHHT  THHHHHTHHHHHHHHHHHHHHHH:    
ExpBur          :-----------------eeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:    

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
6nb6_B_1     937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr          :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG  TTSS S THHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:    
ExpBur          :eebeeeeeebeebeebeeebeebeeebeeebeeeeebeeeebebbeeeeeeeebbebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6nb6_B_1    1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr          :   STTSSSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEEEES EEETTEEEEESSSEEEEETTEEEEE TTS   B  BGGGEEEEEETTS TT EE :    
ExpBur          :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeeeeebeeeeee:    
Contact         :                                     b                        bb b b                                

queryA      1118:TVYDPLQPEL:1127
                :**********:
6nb6_B_1    1137:TVYDPLQPEL:1146
SecStr          :  B THHHH :    
ExpBur          :ebeeeeeeee:

Protein Model on 6nb6_B_1_DA_1 (TEMPLATE: 6nb6 )

Input Residue Numbers for Focused Sites