Protein Model on 6nb6_B_1_C_1
(TEMPLATE: 
6nb6
)Protein Model on 6nb6_B_1_C_1
(TEMPLATE: 6nb6
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1026 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1055 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 218P 269N 719D 722M 727D 737Q 738Y 739G 740S 744Q 747R 768K 769Q 770M 771Y 772K 779F 835Q 836K 837F 839G 843L 844P 845P 846L 847L 848T 851M 854A 855Y 865T 866A 868W 869T 871G 872A 876L 877Q 878I 879P 880F 882M 886Y 894T 895Q 896N 899Y 900E 948L 949S 976D 987Q 1009T 1012S 1013E 1126E (identity: 100.0 %/92.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6nb6_B_1 identity=92.2% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:**** ************************************************ ****************************************:
6nb6_B_1 37:RCTTXXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr : ------- EEEE TEEEEE SS SEEEEEEEEE TT EEEEEEEETTEE EEE TTEEEEEEEESS EEEEEEESSSSTTS EEEEE:
ExpBur :eeee-------eeeebebbebbbbeeeeeebeeeeeeeebebbebebebebbeeeeeeebeeeeebeebbbebbbbeeebebebeebeeeeeeeebeeee:
Contact : b bbb
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:******************** ********************** ****************************************:
6nb6_B_1 137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr :E SSSEEEEEEEEEE SS ---------- SEEEEEEEEEEEE -------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEE:
ExpBur :eeeebeeebbbbbbebeeee----------eeebeeeeeeeeebeeeeeeee--------ebebeebbbebebeeeeeebeeeeebebeeeeeeeeebbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:******************* *********************************************************************:
6nb6_B_1 237:PIFKLPLGINITNFRAILTXXXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr :EEEEE SEEEEEE ------------ EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEE :
ExpBur :eeeeeebeeeeebbbebee------------eeebbebebbebebbbebeeebebebbbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbee:
Contact :b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6nb6_B_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr :S B HHHHT S BSTT EEEEE SEE HHHHT SS SEEEEESS GGGGGG BS EEEEEEEEEGGGGGGSSBT SHHHHHT B SS E:
ExpBur :eeeeebeeeeeeeeeebebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebebebeeebbbeeeeeebeeeeeeeebbebbbbeeeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************** *********** *********:
6nb6_B_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFXXXXXXXXQPYRVVVLSFEXXXXXXTVCGPKLST: 536
SecStr :EEEEEEE TTTT TT TT EEE SS TT B TTS TTSTT B SEEE -------- EEEEEEEEE ------ EE :
ExpBur :beeebbebeeebeeeeebeebebbeeeeeebeeeeeeeeeeebeeeeeeeeeeeeebeebeeebeb--------ebbbebeeeee------ebeeeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6nb6_B_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr : TTSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEEETS HHHHHHHHHTT EES:
ExpBur :eeeeeebbebebeebeeebbbeeeeeebeeeeeeeeeeeeeeebbebeeeebbbbbeebeebbbbbbbbbeeeeebebbbbeebebeebeebeeeeebee:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6nb6_B_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEE EEEEEEEEEEE EEE:
ExpBur :ebeeeeeeeeeeebeebbbbebeebeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************* :
6nb6_B_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr :E HHHHH SS HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S BTTB TTTSB TTSS SBHHHHHHTT ---------:
ExpBur :bebeebbbeebeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeebebbebeebbbeeeeeeeebebbbbbbeee---------:
Contact : b b b bbbb b b bbbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: ***********************************************************************************:
6nb6_B_1 837:XXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr :----------------- TT EEEE SS HHHHHHHHHHHHHHHHHSGGGTTTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHH:
ExpBur :-----------------eeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:
Contact : bbb b bbbbbb b bb bb bb bb bbbbb b b bbb bb
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6nb6_B_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S THHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:
ExpBur :eebeeeeeebeebeebeeebeebeeebeeebeeeeebeeeebebbeeeeeeeebbebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb:
Contact : bb b b b bb
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6nb6_B_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr : STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EEETTEEEEESSSEEEEETTEEEEE TTS B BGGGEEEEEETTS TT EE :
ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeeeeebeeeeee:
queryA 1118:TVYDPLQPEL:1127
:**********:
6nb6_B_1 1137:TVYDPLQPEL:1146
SecStr : B THHHH :
ExpBur :ebeeeeeeee:
Contact : b
|
[assembly_id:1]
[help]