Protein Model on 6nb6_A_1_L_1 (TEMPLATE: 6nb6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) A 1 (A) polymer(polypeptide(L)) [1052 aa] Spike glycoprotein :SPIKE_CVHSA
2 b L 1 (J) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 602N 630Q (identity: 100.0 %/94.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6nb6_A_1 identity=94.5%
queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :****         ********************************************** ****************************************:
6nb6_A_1      37:RCTTXXXXXXXXXTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr          :    --------- EEE TT  EE  SS    SEEEEEEEEE  TT EEEEEEEETTEE    EE TTEEEEEEEESS    EEEEESS STTS EEEEE:    
ExpBur          :eeee---------eeeebbebbbbeeeeeeeeeeeeebebebbebeeebeeeeeeeeeebeeeeebeebbbbbbbbeeebebbeeebeeeeeeeebeeee:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :**********************        **********************        ****************************************:
6nb6_A_1     137:NNSTNVVIRACNFELCDNPFFAXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr          :E SS EEEEEE  EEEEEEEE --------  EEEEEE  S  EEEE     -------- EEEEEEEEEEEETTEEEEEEEEEEEEESSS      EEE:    
ExpBur          :eeeebeebbbbbbbebeeebbe--------eeebeeeeeeeeeeeeeeeeee--------ebeeeebbbebeeeeeeeebebeeebebeeebeeeeeebe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :*********************           ********************************************************************:
6nb6_A_1     237:PIFKLPLGINITNFRAILTAFXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr          :EEEEE      SEEEEE B  ----------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S   SEEEEEEEEEE   SEEE   :    
ExpBur          :eeeebebebeeebbbbbbeee-----------eebbbbeebebebbbbbeeebebeebbbbebebbbbbebeeeeeebeebeeeeeebebeeeeebbbbe:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :****************************************************************************************************:
6nb6_A_1     337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr          :S      THHHHS S   BSTT EEEEE SEE  SSTTTSS   SEEEE SS TGGGGG  BSEEEEEEEEEEGGGGGGSSTT  SHHHHHT    SS  :    
ExpBur          :eeeeebebeebbeeeebebbeebeeeebeebebebeeeeeeeebeeeeeeebebeebbeebbbbbebbbbbbbbebbeebeeebeeebbeebbbbeeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :****************************************************************************************************:
6nb6_A_1     437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536
SecStr          :SEEEEEE TTTT BTT B   EEE   SS   TT        B TTS    TTSTT B SEEE  BBTTS GGGSEEEEEEEEEE SSS  SEE S    :    
ExpBur          :bbbbbbebbeebbeeebbeebeebebeeeebeeebeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbebeebeeebebbbeeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :****************************************************************************************************:
6nb6_A_1     537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr          :    SSEEEEEETTEEEEEEEEE      TT SEEE SSSSEEEEE TTT  EEEEE   EEEEEEEE  TTT    EEEESS  HHHHHHHHHTT EES:    
ExpBur          :eeeeeebbebebbebeeebbbeeeeeebeeeebeeeeeeeeeebbebeeeeebbbbeebeebebbbbbbbeeebeebbbbbbebebeebeebbeeeebee:    
Contact         :                                                                                    b               

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :**********************************************       ***********************************************:
6nb6_A_1     637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr          :  SS    S EEEETTEEEES EEEEEEE  SEEEETTEEEEEEE ------- EEEEEEEE  S        SSEEEEES EEEEEEEEEEE    EEE:    
ExpBur          :ebeeeeeeeeeeebeebbbbebbeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbebbe:    
Contact         :            b                                                                                       

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :*******************************************************************************************         :
6nb6_A_1     737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr          :E HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEEGGGTS  TTSS  S HHHHHHHTT ---------:    
ExpBur          :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbebbeeeeeeeeebebebbebeebbbeeeeeeebbebbebbbeee---------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :*******      ***************************************************************************************:
6nb6_A_1     837:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr          :  BEEE ------ EEE  TT EEEE  SS HHHHHHHHHHHHHHHHHHGGGTTTSS     HHHHHHHHHHTTTS THHHHHTHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeee------eeeeebebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbebbeebbeebe:    

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
6nb6_A_1     937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr          :HHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG  TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:    
ExpBur          :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbb:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6nb6_A_1    1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr          :   STTSS SSEEEEEEEEEETTEEEEEEEEEEE  EEEEEE S EEETTEEEEESSSEEEEETTEEEEE TTS   B  BGGGEEEEEESSS TT EE :    
ExpBur          :bbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeeeeeeeee:    

queryA      1118:TVYDPLQPEL:1127
                :**********:
6nb6_A_1    1137:TVYDPLQPEL:1146
SecStr          :  B THHHH :    
ExpBur          :ebeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123