Protein Model on 6nb6_A_1_C_1
(TEMPLATE: 
6nb6
)Protein Model on 6nb6_A_1_C_1
(TEMPLATE: 6nb6
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1052 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1055 aa] | Spike glycoprotein :SPIKE_CVHSA | 304N 306R 368G 369V 370S 373K 451F 453R 491Y 503L 533T 544R 545F 548F 549Q 550Q 551F 552G 553R 557D 575P 578F 630Q 632Q 633A 651P 653G 654A 655G 656I 657C 679M 681L 682G 683A 685S 686S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 946K 947Q 950S 951N 952F 953G 984Q 988T 992Q 1021R 1022V 1023D 1027K 1029Y 1054E 1061P 1071F 1072P 1076V 1089R 1103F 1105S 1112I (identity: 100.0 %/94.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6nb6_A_1 identity=94.5% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:**** ********************************************** ****************************************:
6nb6_A_1 37:RCTTXXXXXXXXXTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr : --------- EEE TT EE SS SEEEEEEEEE TT EEEEEEEETTEE EE TTEEEEEEEESS EEEEESS STTS EEEEE:
ExpBur :eeee---------eeeebbebbbbeeeeeeeeeeeeebebebbebeeebeeeeeeeeeebeeeeebeebbbbbbbbeeebebbeeebeeeeeeeebeeee:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:********************** ********************** ****************************************:
6nb6_A_1 137:NNSTNVVIRACNFELCDNPFFAXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr :E SS EEEEEE EEEEEEEE -------- EEEEEE S EEEE -------- EEEEEEEEEEEETTEEEEEEEEEEEEESSS EEE:
ExpBur :eeeebeebbbbbbbebeeebbe--------eeebeeeeeeeeeeeeeeeeee--------ebeeeebbbebeeeeeeeebebeeebebeeebeeeeeebe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************* ********************************************************************:
6nb6_A_1 237:PIFKLPLGINITNFRAILTAFXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr :EEEEE SEEEEE B ----------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEEE :
ExpBur :eeeebebebeeebbbbbbeee-----------eebbbbeebebebbbbbeeebebeebbbbebebbbbbebeeeeeebeebeeeeeebebeeeeebbbbe:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6nb6_A_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr :S THHHHS S BSTT EEEEE SEE SSTTTSS SEEEE SS TGGGGG BSEEEEEEEEEEGGGGGGSSTT SHHHHHT SS :
ExpBur :eeeeebebeebbeeeebebbeebeeeebeebebebeeeeeeeebeeeeeeebebeebbeebbbbbebbbbbbbbebbeebeeebeeebbeebbbbeeeeb:
Contact : bbb b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6nb6_A_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536
SecStr :SEEEEEE TTTT BTT B EEE SS TT B TTS TTSTT B SEEE BBTTS GGGSEEEEEEEEEE SSS SEE S :
ExpBur :bbbbbbebbeebbeeebbeebeebebeeeebeeebeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbebeebeeebebbbeeeee:
Contact : b b b b
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6nb6_A_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr : SSEEEEEETTEEEEEEEEE TT SEEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEESS HHHHHHHHHTT EES:
ExpBur :eeeeeebbebebbebeeebbbeeeeeebeeeebeeeeeeeeeebbebeeeeebbbbeebeebebbbbbbbeeebeebbbbbbebebeebeebbeeeebee:
Contact : b bb bbbbbb b b b
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6nb6_A_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEES EEEEEEEEEEE EEE:
ExpBur :ebeeeeeeeeeeebeebbbbebbeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbebbe:
Contact : b bb b bbbbb b bbb bbbbbbb bbb b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************* :
6nb6_A_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr :E HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEEGGGTS TTSS S HHHHHHHTT ---------:
ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbebbeeeeeeeeebebebbebeebbbeeeeeeebbebbebbbeee---------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:******* ***************************************************************************************:
6nb6_A_1 837:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr : BEEE ------ EEE TT EEEE SS HHHHHHHHHHHHHHHHHHGGGTTTSS HHHHHHHHHHTTTS THHHHHTHHHHHHHHHHHHHHHH:
ExpBur :ebbeeee------eeeeebebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbebbeebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6nb6_A_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr :HHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:
ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbb:
Contact : b b bb bbbb b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6nb6_A_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr : STTSS SSEEEEEEEEEETTEEEEEEEEEEE EEEEEE S EEETTEEEEESSSEEEEETTEEEEE TTS B BGGGEEEEEESSS TT EE :
ExpBur :bbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeeeeeeeee:
Contact : bbb b b b b bb b b b b b
queryA 1118:TVYDPLQPEL:1127
:**********:
6nb6_A_1 1137:TVYDPLQPEL:1146
SecStr : B THHHH :
ExpBur :ebeeeeeeee:
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[assembly_id:1]
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