Protein Model on 6nb6_A_1_B_1
(TEMPLATE: 
6nb6
)Protein Model on 6nb6_A_1_B_1
(TEMPLATE: 6nb6
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1052 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1026 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 218P 269N 719D 721N 722M 727D 737Q 738Y 744Q 746N 747R 750S 769Q 770M 771Y 772K 779F 818Q 824G 835Q 836K 837F 839G 843L 844P 845P 846L 847L 848T 851M 854A 855Y 865T 868W 869T 872A 875A 876L 877Q 879P 880F 882M 886Y 894T 896N 899Y 902Q 949S 976D 980T 984Q 987Q 994L 1001R 1012S 1013E 1021R (identity: 100.0 %/94.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6nb6_A_1 identity=94.5% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:**** ********************************************** ****************************************:
6nb6_A_1 37:RCTTXXXXXXXXXTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136
SecStr : --------- EEE TT EE SS SEEEEEEEEE TT EEEEEEEETTEE EE TTEEEEEEEESS EEEEESS STTS EEEEE:
ExpBur :eeee---------eeeebbebbbbeeeeeeeeeeeeebebebbebeeebeeeeeeeeeebeeeeebeebbbbbbbbeeebebbeeebeeeeeeeebeeee:
Contact : b bbb
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:********************** ********************** ****************************************:
6nb6_A_1 137:NNSTNVVIRACNFELCDNPFFAXXXXXXXXTHTMIFDNAFNCTFEYISDAFSXXXXXXXXNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236
SecStr :E SS EEEEEE EEEEEEEE -------- EEEEEE S EEEE -------- EEEEEEEEEEEETTEEEEEEEEEEEEESSS EEE:
ExpBur :eeeebeebbbbbbbebeeebbe--------eeebeeeeeeeeeeeeeeeeee--------ebeeeebbbebeeeeeeeebebeeebebeeebeeeeeebe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************* ********************************************************************:
6nb6_A_1 237:PIFKLPLGINITNFRAILTAFXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336
SecStr :EEEEE SEEEEE B ----------- EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEEE :
ExpBur :eeeebebebeeebbbbbbeee-----------eebbbbeebebebbbbbeeebebeebbbbebebbbbbebeeeeeebeebeeeeeebebeeeeebbbbe:
Contact :b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6nb6_A_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436
SecStr :S THHHHS S BSTT EEEEE SEE SSTTTSS SEEEE SS TGGGGG BSEEEEEEEEEEGGGGGGSSTT SHHHHHT SS :
ExpBur :eeeeebebeebbeeeebebbeebeeeebeebebebeeeeeeeebeeeeeeebebeebbeebbbbbebbbbbbbbebbeebeeebeeebbeebbbbeeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6nb6_A_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536
SecStr :SEEEEEE TTTT BTT B EEE SS TT B TTS TTSTT B SEEE BBTTS GGGSEEEEEEEEEE SSS SEE S :
ExpBur :bbbbbbebbeebbeeebbeebeebebeeeebeeebeeeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbebeebeeebebbbeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6nb6_A_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636
SecStr : SSEEEEEETTEEEEEEEEE TT SEEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEESS HHHHHHHHHTT EES:
ExpBur :eeeeeebbebebbebeeebbbeeeeeebeeeebeeeeeeeeeebbebeeeeebbbbeebeebebbbbbbbeeebeebbbbbbebebeebeebbeeeebee:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6nb6_A_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736
SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE S SSEEEEES EEEEEEEEEEE EEE:
ExpBur :ebeeeeeeeeeeebeebbbbebbeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbebbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************* :
6nb6_A_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836
SecStr :E HHHHHHTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEEGGGTS TTSS S HHHHHHHTT ---------:
ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbebbeeeeeeeeebebebbebeebbbeeeeeeebbebbebbbeee---------:
Contact : b bb b bb b bb b bbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:******* ***************************************************************************************:
6nb6_A_1 837:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936
SecStr : BEEE ------ EEE TT EEEE SS HHHHHHHHHHHHHHHHHHGGGTTTSS HHHHHHHHHHTTTS THHHHHTHHHHHHHHHHHHHHHH:
ExpBur :ebbeeee------eeeeebebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbebbeebbeebe:
Contact :b b bbb b bbbbbb b bb b bb b bbb bb b b b b b b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6nb6_A_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036
SecStr :HHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:
ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbb:
Contact : b b b b b b b bb
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6nb6_A_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136
SecStr : STTSS SSEEEEEEEEEETTEEEEEEEEEEE EEEEEE S EEETTEEEEESSSEEEEETTEEEEE TTS B BGGGEEEEEESSS TT EE :
ExpBur :bbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeebeeeeeeeee:
Contact : b
queryA 1118:TVYDPLQPEL:1127
:**********:
6nb6_A_1 1137:TVYDPLQPEL:1146
SecStr : B THHHH :
ExpBur :ebeeeeeeee:
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[assembly_id:1]
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