Protein Model on 6cs2_B_1_P_1
(TEMPLATE: 
6cs2
)Protein Model on 6cs2_B_1_P_1
(TEMPLATE: 6cs2
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1076 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | P 1 (P) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 318N 566K (identity: 100.0 %/96.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6cs2_B_1 identity=96.7% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6cs2_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : SS B EEEE TT B SS SEEEEEEEEE TT EEEEEEE TTB EE TT EEEEEEESS EEEEESSSSTTS EEEEE:
ExpBur :eeeebeeeeeeeeeebebbebbbbeeeeeeeeeebeebeeebbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6cs2_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SS EEEEEEEEEEEEEEEEEEETTT SEEEEEEEEEEEEEEEEEE S SS EEEEEEEEEETTEEEEEEEEEE SSS BE:
ExpBur :bebeeebbebbbbebbebbbbbbbeeebeeeeebbeeebeeeeeeeebeeeebebeeeeeebebbebbbbbeeeeebbbbebeeebeeeeebeeeebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6cs2_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :EEEEEE EEEEEEEEEE --- SEEEEEEE EEEEEEEEE TTS EEE BSSS HHHHHHHHHTSS SEEEEEEEEEE EEE :
ExpBur :eeeebebebebeebbbbbbbbbe---ebbbbebbbbbbebeebebbbebeeeeebeebbbbebebbbebebeeeeeebeebeeebeebebeeeeebebee:
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************** ***********************************************:
6cs2_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr :S S TTTSS S STT EEE S B HHHHS TT S EE --- THHHH S EEEEEEEEETTGGGGSSSS SHHHHHT B SSS :
ExpBur :eeeeebebeebeeeeebebbbbbeebebeebebebeebeeeeeeebeeee---eebbeebeeebbbbbbbbbebebeeebbeeeebebbbebbbbbeeeb:
Contact :b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6cs2_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr : EEEEEE HHHH SS B EEE SS BT B TTSS TTSTT B SEEE B TTS GGGSEEEEEEEEE ------ B B :
ExpBur :bbbbbeebeeebbeeeebeebeebeeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeebebbbbbbbbbbe------ebeeeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6cs2_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : SSEEEEE SS EEEEE TT B SSSSB EEE TTT EEEEE EEEEEEEES TTT EEEEET HHHHHHHHHTT EES:
ExpBur :eeeeeebbebebeebeeebbbeeeeeebeeeeeeeeeeeeeeebbebeeeeeebebeebbebbbbbbbbbeeebeeebbbbeeeebeebeebbeeeebee:
Contact : b
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6cs2_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS S EE SSEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE TTEEEEEEEEEEEEEEEEEE EE:
ExpBur :ebeeeebeeeeeebeebbbbebeeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebeeebebebeebbbbbbbebbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6cs2_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E SHHHHTSS HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHSTT SS S EETTEE TTTS SSS SS HHHHHHHHH --------:
ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeeeeeeeeeeeebeeebbebebbbbeeeeeeeebebbebbbebbe--------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** ***************************************************************************************:
6cs2_B_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : BEE ------- EE SSSEEE SS HHHHHHHHHHHHHHHTTTSHHHHSSS HHHHHHHHHHHTT THHHHTSHHHHHHHHHHHHHHHH:
ExpBur :eebeee-------eeeeeeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeeee:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6cs2_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHH STTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS:
ExpBur :eeeeeeeeebeebeebeebbeebbeebeeeeeeeeebeeeebeebeeeeeeeebeeebeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbb:
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6cs2_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : TBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE SEEEETTEEEEESSSEEEE SSSEEEE SSS B BSSSEEEEEESSSSSSEEE :
ExpBur :bbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeeebbeeeeebebbeeebbeeeebbeebbeeeeebeeeeeeeee:
queryA 1118:TVYDPLQPEL:1127
:**********:
6cs2_B_1 1105:TVYDPLQPEL:1114
SecStr : B TTGGG :
ExpBur :ebeeeeeeee:
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[assembly_id:1]
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