Protein Model on 6cs2_B_1_C_1
(TEMPLATE: 
6cs2
)Protein Model on 6cs2_B_1_C_1
(TEMPLATE: 6cs2
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1076 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [893 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 304N 306R 534G 535T 543K 544R 545F 546Q 548F 549Q 550Q 551F 552G 553R 554D 555V 556S 557D 558F 573I 574S 575P 577S(A) 578F 600D 632Q 651P 653G 654A 655G 679M 681L 683A 684D 685S 686S 687I 688A 689Y 690S 691N 692N 693T 694I 695A 697P 943T 946K 947Q 950S 951N 952F 953G 954A 977R 984Q 995I 999E 1021R 1023D 1028G 1029Y 1054E 1059T 1071F 1076V 1089R 1103F 1105S 1111V 1112I 1123L (identity: 98.6 %/96.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6cs2_B_1 identity=96.7% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6cs2_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : SS B EEEE TT B SS SEEEEEEEEE TT EEEEEEE TTB EE TT EEEEEEESS EEEEESSSSTTS EEEEE:
ExpBur :eeeebeeeeeeeeeebebbebbbbeeeeeeeeeebeebeeebbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6cs2_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SS EEEEEEEEEEEEEEEEEEETTT SEEEEEEEEEEEEEEEEEE S SS EEEEEEEEEETTEEEEEEEEEE SSS BE:
ExpBur :bebeeebbebbbbebbebbbbbbbeeebeeeeebbeeebeeeeeeeebeeeebebeeeeeebebbebbbbbeeeeebbbbebeeebeeeeebeeeebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6cs2_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :EEEEEE EEEEEEEEEE --- SEEEEEEE EEEEEEEEE TTS EEE BSSS HHHHHHHHHTSS SEEEEEEEEEE EEE :
ExpBur :eeeebebebebeebbbbbbbbbe---ebbbbebbbbbbebeebebbbebeeeeebeebbbbebebbbebebeeeeeebeebeeebeebebeeeeebebee:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************** ***********************************************:
6cs2_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr :S S TTTSS S STT EEE S B HHHHS TT S EE --- THHHH S EEEEEEEEETTGGGGSSSS SHHHHHT B SSS :
ExpBur :eeeeebebeebeeeeebebbbbbeebebeebebebeebeeeeeeebeeee---eebbeebeeebbbbbbbbbebebeeebbeeeebebbbebbbbbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6cs2_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr : EEEEEE HHHH SS B EEE SS BT B TTSS TTSTT B SEEE B TTS GGGSEEEEEEEEE ------ B B :
ExpBur :bbbbbeebeeebbeeeebeebeebeeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeebebbbbbbbbbbe------ebeeeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6cs2_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : SSEEEEE SS EEEEE TT B SSSSB EEE TTT EEEEE EEEEEEEES TTT EEEEET HHHHHHHHHTT EES:
ExpBur :eeeeeebbebebeebeeebbbeeeeeebeeeeeeeeeeeeeeebbebeeeeeebebeebbebbbbbbbbbeeebeeebbbbeeeebeebeebbeeeebee:
Contact : bb bbbb bbbbbbbbbbb bbb bb b
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6cs2_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS S EE SSEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE TTEEEEEEEEEEEEEEEEEE EE:
ExpBur :ebeeeebeeeeeebeebbbbebeeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebeeebebebeebbbbbbbebbe:
Contact : b b bbb b b bbbbbbbbbbbbb b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6cs2_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E SHHHHTSS HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHSTT SS S EETTEE TTTS SSS SS HHHHHHHHH --------:
ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeeeeeeeeeeeebeeebbebebbbbeeeeeeeebebbebbbebbe--------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** ***************************************************************************************:
6cs2_B_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : BEE ------- EE SSSEEE SS HHHHHHHHHHHHHHHTTTSHHHHSSS HHHHHHHHHHHTT THHHHTSHHHHHHHHHHHHHHHH:
ExpBur :eebeee-------eeeeeeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeeee:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6cs2_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHH STTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS:
ExpBur :eeeeeeeeebeebeebeebbeebbeebeeeeeeeeebeeeebeebeeeeeeeebeeebeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbb:
Contact : b bb bbbbb b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6cs2_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : TBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE SEEEETTEEEEESSSEEEE SSSEEEE SSS B BSSSEEEEEESSSSSSEEE :
ExpBur :bbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeeebbeeeeebebbeeebbeeeebbeebbeeeeebeeeeeeeee:
Contact : b b bb b b b b b b b bb
queryA 1118:TVYDPLQPEL:1127
:**********:
6cs2_B_1 1105:TVYDPLQPEL:1114
SecStr : B TTGGG :
ExpBur :ebeeeeeeee:
Contact : b
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[assembly_id:1]
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