Protein Model on 6cs2_B_1_A_1
(TEMPLATE: 
6cs2
)Protein Model on 6cs2_B_1_A_1
(TEMPLATE: 6cs2
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1076 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [891 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 42Y 44D 45E 46I 47F 48R 269N 719D 722M 727D 737Q 738Y 739G 740S 741F 746N 747R 750S 758R 768K 769Q 770M 771Y 772K 779F 818Q 835Q 836K 837F 839G 841T 842V 843L 845P 846L 848T 851M 854A 855Y 865T 868W 872A 873G 876L 877Q 878I 879P 880F 882M 886Y 894T 896N 899Y 945V 949S 984Q 994L 995I 1001R 1009T 1012S 1013E 1016L 1021R (identity: 100.0 %/96.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6cs2_B_1 identity=96.7% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6cs2_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : SS B EEEE TT B SS SEEEEEEEEE TT EEEEEEE TTB EE TT EEEEEEESS EEEEESSSSTTS EEEEE:
ExpBur :eeeebeeeeeeeeeebebbebbbbeeeeeeeeeebeebeeebbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:
Contact : b bbbbb
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6cs2_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SS EEEEEEEEEEEEEEEEEEETTT SEEEEEEEEEEEEEEEEEE S SS EEEEEEEEEETTEEEEEEEEEE SSS BE:
ExpBur :bebeeebbebbbbebbebbbbbbbeeebeeeeebbeeebeeeeeeeebeeeebebeeeeeebebbebbbbbeeeeebbbbebeeebeeeeebeeeebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6cs2_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :EEEEEE EEEEEEEEEE --- SEEEEEEE EEEEEEEEE TTS EEE BSSS HHHHHHHHHTSS SEEEEEEEEEE EEE :
ExpBur :eeeebebebebeebbbbbbbbbe---ebbbbebbbbbbebeebebbbebeeeeebeebbbbebebbbebebeeeeeebeebeeebeebebeeeeebebee:
Contact : b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************** ***********************************************:
6cs2_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr :S S TTTSS S STT EEE S B HHHHS TT S EE --- THHHH S EEEEEEEEETTGGGGSSSS SHHHHHT B SSS :
ExpBur :eeeeebebeebeeeeebebbbbbeebebeebebebeebeeeeeeebeeee---eebbeebeeebbbbbbbbbebebeeebbeeeebebbbebbbbbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6cs2_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr : EEEEEE HHHH SS B EEE SS BT B TTSS TTSTT B SEEE B TTS GGGSEEEEEEEEE ------ B B :
ExpBur :bbbbbeebeeebbeeeebeebeebeeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeebebbbbbbbbbbe------ebeeeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6cs2_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : SSEEEEE SS EEEEE TT B SSSSB EEE TTT EEEEE EEEEEEEES TTT EEEEET HHHHHHHHHTT EES:
ExpBur :eeeeeebbebebeebeeebbbeeeeeebeeeeeeeeeeeeeeebbebeeeeeebebeebbebbbbbbbbbeeebeeebbbbeeeebeebeebbeeeebee:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** ***********************************************:
6cs2_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS S EE SSEEEES EEEEEEE SEEEETTEEEEEEE ------- EEEEEEEE TTEEEEEEEEEEEEEEEEEE EE:
ExpBur :ebeeeebeeeeeebeebbbbebeeeeeeeeeebebeeebbbbeeee-------eeebbbbeeeeeeeeeeeeeeeeeebeeebebebeebbbbbbbebbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6cs2_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E SHHHHTSS HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHSTT SS S EETTEE TTTS SSS SS HHHHHHHHH --------:
ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeeeeeeeeeeeebeeebbebebbbbeeeeeeeebebbebbbebbe--------:
Contact : b b b bbbbb bb b b bbbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** ***************************************************************************************:
6cs2_B_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : BEE ------- EE SSSEEE SS HHHHHHHHHHHHHHHTTTSHHHHSSS HHHHHHHHHHHTT THHHHTSHHHHHHHHHHHHHHHH:
ExpBur :eebeee-------eeeeeeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeeee:
Contact :b bbb b bbb bb b b bb b b bb bbbbb b b b b b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6cs2_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHH STTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS:
ExpBur :eeeeeeeeebeebeebeebbeebbeebeeeeeeeeebeeeebeebeeeeeeeebeeebeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbb:
Contact : b b b bb b b bb b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6cs2_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : TBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE SEEEETTEEEEESSSEEEE SSSEEEE SSS B BSSSEEEEEESSSSSSEEE :
ExpBur :bbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeeebbeeeeebebbeeebbeeeebbeebbeeeeebeeeeeeeee:
Contact : b
queryA 1118:TVYDPLQPEL:1127
:**********:
6cs2_B_1 1105:TVYDPLQPEL:1114
SecStr : B TTGGG :
ExpBur :ebeeeeeeee:
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[assembly_id:1]
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