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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (A) | polymer(polypeptide(L)) [1066 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | X 1 (X) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 318N 566K (identity: 100.0 %/96.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6cs1_C_1 identity=96.4% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6cs1_C_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S EEE TT EE S S EEEEEEEE TT EEEEEE SS EE TT EEEEEEESS EEEEESS SSSS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbbeeeeeeeeebeebeeebbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebebebebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6cs1_C_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEE EEEEEEEEEETTT SEEEEEEES S EEEE S SS EEEEEEEEEETTEEEEEEEEEE SSS EEE: ExpBur :eebebebbebbbbebbebbbbbbbeeebeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebbbbebeeebeeeeebeebeebbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6cs1_C_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE SEEEEEEEEEE --- SEEEE B EEEEEEEEE TTS EEEEEESSS HHHHHHHHHT SS SS EE EEE EEE : ExpBur :eeeebebebebeebbbbbbbbee---ebbbbebbbbbbebeebebbbebeeebebeebbbbebebbbebebeeeeeebeebeeebeebebeeeeebbbee: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6cs1_C_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr : B TTTTSS S TTS EEEE SEE TTTSS SSBS EE --- GGGTS SS EEEEEEE STTSTT SSS TTHHHHHT B SSSE: ExpBur :eeeeebebeebbebeebebbbbbeeeebeebbbbbeebeeeeebebeebe---bebeeebeeeebbbbbbbbbbebbeebbeeeeeebbbbbbebbeeeb: Contact :b queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6cs1_C_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr :EEEEEEE TTTT BSS BTT EEE SS BT TTS TTSTT SEEE BBSSS GGG EEEEEEE ------ EE : ExpBur :bbbbbbebeeebbeeebeeebebbeeeeeebeeeeebeeebebbeeeeebeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbe------ebebeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6cs1_C_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : TTS EEEE SS EEEEEEEE SS EEE SSSSEEEEB TTT BEEEE EE EEEE TTT S EEEEESS THHHHHHHHHT EES: ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbebeeeeeebebeebeebebbbbbbbeeeeeebbbbbeebebeebeebbeeeebee: Contact : b queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 6cs1_C_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEESSEE SEEEETTEEEEEE --------- EEEEEE S SSEEEEEEEEEEEEEEEEEE EE: ExpBur :ebeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6cs1_C_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E HHHHHSSS HHHHHHHTTS SHHHHHHHHHHHHHHHHHHHHHHHSTT SS S EETTEE TTTS SSSTT HHHHHHHHT --------: ExpBur :bebeebbbeebeebeeebeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeebebbebebbbbbeeeeeeebebbebbeeeee--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** **************************************************************************************: 6cs1_C_1 805:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : B B -------- B SSSEEE SS HHHHHHHHHHHHHHHHHHGGGGTTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeee--------eeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6cs1_C_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHS SSS HHHHHHHHHHHHHHHHHHHGGG TTSS SSHHHHTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS: ExpBur :eebeebeeebeebeebeeebeebbeebeeeeeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6cs1_C_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : STTTTSSSEEEEE EEETTEEEEEEEEEEEEEEEEEEEESEEESSS EEE SSSEEEESSSSEEEE SSS EE STT EE SSSSSSS EEE : ExpBur :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbbeeebbeeeebbbbeeeeebbbbeebbeeeeebbeeebeeeeebeeeeebeee: queryA 1118:TVY:1120 :***: 6cs1_C_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |